RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SELENOTP62341 195 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 TMEM14EPQ6UXP3 125 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 TMEM37Q8WXS4 190 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 SLC50A1Q9BRV3 221 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 A0A087WTM6 91 aa13.04□□□□□ -0.32
NUP88-203ENST00000572019 IGLC2P0DOY2 106 aa13.04□□□□□ -0.32
NUP88-203ENST00000572019 ERVFC1-1P60608 527 aa13.04□□□□□ -0.32
NUP88-203ENST00000572019 OPCMLQ14982 345 aa13.04□□□□□ -0.32
NUP88-203ENST00000572019 TEPPQ6URK8 271 aa13.04□□□□□ -0.32
NUP88-203ENST00000572019 SAT2Q96F10 170 aaPredicted RBP13.04□□□□□ -0.32
NUP88-203ENST00000572019 TRAV5A0A0B4J249 113 aa13.03□□□□□ -0.32
NUP88-203ENST00000572019 PIGBOS1A0A0B4J2F0 54 aa13.03□□□□□ -0.32
NUP88-203ENST00000572019 MCFD2Q8NI22 146 aa13.03□□□□□ -0.32
NUP88-203ENST00000572019 FRZBQ92765 325 aa13.03□□□□□ -0.32
NUP88-203ENST00000572019 KLF12Q9Y4X4 402 aa13.03□□□□□ -0.32
NUP88-203ENST00000572019 TRGV2A0A075B6R0 118 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 TRGV1A0A0A0MS02 117 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 NPIPB6E9PJ23 425 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 AGPAT2O15120 278 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 CD300CQ08708 224 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 CDPF1Q6NVV7 123 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 Q6ZQT7 251 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 SMIM8Q96KF7 97 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 MGST2Q99735 147 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 PYGO2Q9BRQ0 406 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 NPVFQ9HCQ7 196 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 FUT9Q9Y231 359 aa13.02□□□□□ -0.33
NUP88-203ENST00000572019 IGHV3-53P01767 116 aa13.01□□□□□ -0.33
NUP88-203ENST00000572019 FAUP35544 74 aaKnown RBP13.01□□□□□ -0.33
NUP88-203ENST00000572019 ERCC8Q13216 396 aa13.01□□□□□ -0.33
NUP88-203ENST00000572019 TOMM5Q8N4H5 51 aa13.01□□□□□ -0.33
NUP88-203ENST00000572019 C18orf15Q96N68 181 aa13.01□□□□□ -0.33
NUP88-203ENST00000572019 V9GYH0 126 aa13.01□□□□□ -0.33
NUP88-203ENST00000572019 C9orf170A2RU37 121 aa13□□□□□ -0.33
NUP88-203ENST00000572019 LEPP41159 167 aa13□□□□□ -0.33
NUP88-203ENST00000572019 BTN1A1Q13410 526 aa13□□□□□ -0.33
NUP88-203ENST00000572019 ICAM4Q14773 271 aa13□□□□□ -0.33
NUP88-203ENST00000572019 BPIFA4PQ86YQ2 179 aa13□□□□□ -0.33
NUP88-203ENST00000572019 ODF3Q96PU9 254 aa13□□□□□ -0.33
NUP88-203ENST00000572019 SLC25A21Q9BQT8 299 aaPredicted RBP13□□□□□ -0.33
NUP88-203ENST00000572019 MRPS26Q9BYN8 205 aaKnown RBP13□□□□□ -0.33
NUP88-203ENST00000572019 PTTG2Q9NZH5 202 aa13□□□□□ -0.33
NUP88-203ENST00000572019 TP53TG3Q9ULZ0 132 aa13□□□□□ -0.33
NUP88-203ENST00000572019 FNDC10F2Z333 226 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 M0R3E3 92 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 GOSR2O14653 212 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 ZNF324O75467 553 aaPredicted RBP12.99□□□□□ -0.33
NUP88-203ENST00000572019 PYDC2Q56P42 97 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 ZNF546Q86UE3 836 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 RAB2BQ8WUD1 216 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 FLVCR2Q9UPI3 526 aa12.99□□□□□ -0.33
NUP88-203ENST00000572019 RCL1Q9Y2P8 373 aaKnown RBP12.99□□□□□ -0.33
NUP88-203ENST00000572019 C7orf71A4D174 169 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 EREGO14944 169 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 PAX4O43316 350 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 COX7A2P2O60397 106 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 SPINK4O60575 86 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 LYPD5Q6UWN5 251 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 OR10P1Q8NGE3 313 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 MRPL16Q9NX20 251 aaKnown RBP12.98□□□□□ -0.33
NUP88-203ENST00000572019 MGAT4CQ9UBM8 478 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 PXMP4Q9Y6I8 212 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 ICOSQ9Y6W8 199 aa12.98□□□□□ -0.33
NUP88-203ENST00000572019 KLLNB2CW77 178 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 SCGB1D2O95969 90 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 PRR9Q5T870 116 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 PXDC1Q5TGL8 231 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 C10orf113Q5VZT2 155 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 WFDC10BQ8IUB3 73 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 FAM19A4Q96LR4 140 aa12.97□□□□□ -0.33
NUP88-203ENST00000572019 H3BMQ9 156 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 TCL1AP56279 114 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 AP3S2P59780 193 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 MIC13Q5XKP0 118 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 ST6GAL2Q96JF0 529 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 C8orf49Q96NF6 230 aa12.96□□□□□ -0.33
NUP88-203ENST00000572019 PRAF2O60831 178 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 IFNA5P01569 189 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 SLC25A5P05141 298 aaKnown RBP12.95□□□□□ -0.34
NUP88-203ENST00000572019 RNASE4P34096 147 aaKnown RBP12.95□□□□□ -0.34
NUP88-203ENST00000572019 CRYBA4P53673 196 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 TMBIM6P55061 237 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 FHL2Q14192 279 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 S100A7AQ86SG5 101 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 ZNF680Q8NEM1 530 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 LINC00467Q9BRT7 94 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 AGPAT4-IT1Q9H0P7 198 aa12.95□□□□□ -0.34
NUP88-203ENST00000572019 TSC22D2O75157 780 aa12.94□□□□□ -0.34
NUP88-203ENST00000572019 NDUFB4O95168 129 aa12.94□□□□□ -0.34
NUP88-203ENST00000572019 GCSHP23434 173 aa12.94□□□□□ -0.34
NUP88-203ENST00000572019 UBE2MP61081 183 aaKnown RBP12.94□□□□□ -0.34
NUP88-203ENST00000572019 ANXA2RQ3ZCQ2 193 aa12.94□□□□□ -0.34
NUP88-203ENST00000572019 C4orf46Q504U0 113 aa12.94□□□□□ -0.34
NUP88-203ENST00000572019 EIF4E3Q8N5X7 224 aaKnown RBP12.94□□□□□ -0.34
NUP88-203ENST00000572019 DNAH8Q96JB1 4490 aa12.93□□□□□ -0.34
NUP88-203ENST00000572019 C7orf66A4D0T2 115 aa12.93□□□□□ -0.34
NUP88-203ENST00000572019 IAH1Q2TAA2 248 aaPredicted RBP12.93□□□□□ -0.34
NUP88-203ENST00000572019 DNAJC4Q9NNZ3 241 aa12.93□□□□□ -0.34
NUP88-203ENST00000572019 MSRB1Q9NZV6 116 aa12.93□□□□□ -0.34
NUP88-203ENST00000572019 RNF24Q9Y225 148 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms