RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TRBV27A0A0K0K1C4 114 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 FAM236AA0A1B0GUQ0 79 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 FAM236BA0A1B0GV22 79 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TMEM235A6NFC5 223 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 A8MWV9 139 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 ZNF670-ZNF695F2Z2N8 137 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 F6UZH7 168 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 H3BMG7 143 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 H3BPC8 53 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 J3QR89 54 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 NPFFO15130 113 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 RER1O15258 196 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 GNRH2O43555 120 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 CREBL2O60519 120 aaPredicted RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 NCR2O95944 276 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TCL1BO95988 128 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 MT-ND6P03923 174 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 CLPSP04118 112 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 SHBGP04278 402 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TCRAP04437 139 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 GPX1P07203 203 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 METTL15P1P0C7V9 234 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 COX6A1P12074 109 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 DEFA4P12838 97 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 HLA-EP13747 358 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 CRYGSP22914 178 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 NFYAP23511 347 aaPredicted RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 RPL22P35268 128 aaKnown RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 AQP4P55087 323 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 COPZ1P61923 177 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 DYNLT1P63172 113 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 QRFPP83859 136 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 KLRD1Q13241 179 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 DIAPH2-AS1Q14236 149 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 ESPL1Q14674 2120 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 HSD17B12Q53GQ0 312 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 KHDC3LQ587J8 217 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 RNASE10Q5GAN6 216 aaKnown RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 FAM27BQ5VT28 67 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 GLIPR1L1Q6UWM5 242 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 PATE2Q6UY27 113 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 DEFB128Q7Z7B8 93 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 CTAGE3PQ8IX95 158 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 PDZD9Q8IXQ8 264 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 DYNAPQ8N1N2 210 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 MMGT1Q8N4V1 131 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 C3orf56Q8N813 242 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 MORN4Q8NDC4 146 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 OR4S1Q8NGB4 309 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 OR5D16Q8NGK9 328 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 OR5H6Q8NGV6 325 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 OR10AC1Q8NH08 325 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 ZNF418Q8TF45 676 aaPredicted RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 AQP3Q92482 292 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 C14orf144Q96I85 54 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 PRELID3AQ96N28 172 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 ZNF714Q96N38 554 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 NPCDR1Q9BY65 106 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TAF9BQ9HBM6 251 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 COA4Q9NYJ1 87 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TRPM7Q96QT4 1865 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 PLXNA4Q9HCM2 1894 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 TMEM2Q9UHN6 1383 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 AHNAK2Q8IVF2 5795 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 COL4A2P08572 1712 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 MDC1Q14676 2089 aaKnown RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 COL1A1P02452 1464 aaPredicted RBP0.66□□□□□ -2.3
VPS35-207ENST00000568191 COL6A6A6NMZ7 2263 aa0.66□□□□□ -2.3
VPS35-207ENST00000568191 QRICH2Q9H0J4 1663 aa0.65□□□□□ -2.3
VPS35-207ENST00000568191 SPTBP11277 2137 aa0.65□□□□□ -2.3
VPS35-207ENST00000568191 ZGRF1Q86YA3 2104 aa0.65□□□□□ -2.3
VPS35-207ENST00000568191 ASCC3Q8N3C0 2202 aaKnown RBP0.65□□□□□ -2.3
VPS35-207ENST00000568191 KIAA1107Q9UPP5 1409 aa0.65□□□□□ -2.3
VPS35-207ENST00000568191 PCDH15Q96QU1 1955 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 MYO18AQ92614 2054 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 BCORL1Q5H9F3 1711 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 TRAV27A0A087WT01 109 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 A0A0D9SG52 128 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 TRBV10-2A0A0K0K1G8 114 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 LOC100130705A0A1B0GUX0 176 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SPAARA0A1B0GVQ0 90 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 C20orf202A1L168 122 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 C7orf71A4D174 169 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 OR2T8A6NH00 312 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 C11orf86A6NJI1 115 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 ZNF727A8MUV8 499 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 H7C2G1 150 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 CORTO00230 105 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SDCBPO00560 298 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 UQCRQO14949 82 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 TIMM17BO60830 172 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 IFNA4P05014 189 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 APODP05090 189 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 S100A8P05109 93 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 SLC25A5P05141 298 aaKnown RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 TRGC1P0CF51 173 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 CRYGAP11844 174 aa0.65□□□□□ -2.31
VPS35-207ENST00000568191 GUCA1AP43080 201 aaPredicted RBP0.65□□□□□ -2.31
VPS35-207ENST00000568191 RBP2P50120 134 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms