RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 SEC11CQ9BY50 192 aa10.02□□□□□ -0.81
CLK3-218ENST00000566926 IGHV3-49A0A0A0MS15 119 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 HELTA6NFD8 242 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 EIF3GO75821 320 aaKnown RBP eCLIP10.01□□□□□ -0.81
CLK3-218ENST00000566926 SFTA3P0C7M3 94 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 PYYP10082 97 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 ATF4P18848 351 aaPredicted RBP10.01□□□□□ -0.81
CLK3-218ENST00000566926 PSG9Q00887 426 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 RXFP4Q8TDU9 374 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 CLEC5AQ9NY25 188 aa10.01□□□□□ -0.81
CLK3-218ENST00000566926 STAB2Q8WWQ8 2551 aa10□□□□□ -0.81
CLK3-218ENST00000566926 TRBV19A0A075B6N1 114 aa10□□□□□ -0.81
CLK3-218ENST00000566926 A0A087X0K7 114 aa10□□□□□ -0.81
CLK3-218ENST00000566926 LOC102724200A0A096LPH7 203 aaPredicted RBP10□□□□□ -0.81
CLK3-218ENST00000566926 MRPS12O15235 138 aaKnown RBP10□□□□□ -0.81
CLK3-218ENST00000566926 SRP19P09132 144 aaKnown RBP10□□□□□ -0.81
CLK3-218ENST00000566926 SRSF3P84103 164 aaKnown RBP10□□□□□ -0.81
CLK3-218ENST00000566926 FAM74A3Q4VXF1 159 aa10□□□□□ -0.81
CLK3-218ENST00000566926 SOHLH1Q5JUK2 328 aa10□□□□□ -0.81
CLK3-218ENST00000566926 FAM90A2PQ658T7 463 aa10□□□□□ -0.81
CLK3-218ENST00000566926 LEMD1Q68G75 181 aa10□□□□□ -0.81
CLK3-218ENST00000566926 TCF24Q7RTU0 167 aa10□□□□□ -0.81
CLK3-218ENST00000566926 ARL6IP6Q8N6S5 226 aa10□□□□□ -0.81
CLK3-218ENST00000566926 WFDC10AQ9H1F0 79 aa10□□□□□ -0.81
CLK3-218ENST00000566926 IGHV3OR16-13A0A075B7E8 117 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 IGHV3-74A0A0B4J1X5 117 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 TRAV2A0A0B4J234 112 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 RBMY1BA6NDE4 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 RBMY1EA6NEQ0 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 DNASE2O00115 360 aaPredicted RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 RBMY1DP0C7P1 496 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 UBE2G2P60604 165 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 RPL11P62913 178 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 C16orf54Q6UWD8 224 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 CCDC28AQ8IWP9 274 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 HIST1H2BAQ96A08 127 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 C11orf52Q96A22 123 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 AAMDCQ9H7C9 122 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 OTORQ9NRC9 128 aa9.99□□□□□ -0.81
CLK3-218ENST00000566926 CARHSP1Q9Y2V2 147 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 YTHDF2Q9Y5A9 579 aaKnown RBP9.99□□□□□ -0.81
CLK3-218ENST00000566926 IGKV3-7A0A075B6H7 116 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 F8W036 122 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 APOHP02749 345 aaPredicted RBP9.98□□□□□ -0.81
CLK3-218ENST00000566926 C10orf91Q5T1B1 145 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 SIGLEC15Q6ZMC9 328 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 CYB561D1Q8N8Q1 229 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 C5orf17Q8NAS9 161 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 GLMPQ8WWB7 406 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 SLC50A1Q9BRV3 221 aa9.98□□□□□ -0.81
CLK3-218ENST00000566926 SERTM2A0A1B0GWG4 89 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 GGTLC3B5MD39 225 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 C9JQL5 133 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 H3BQ15 152 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 TFPI2P48307 235 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 APOC4P55056 127 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 RANP62826 216 aaKnown RBP9.97□□□□□ -0.81
CLK3-218ENST00000566926 ODF3L2Q3SX64 289 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 SVBPQ8N300 66 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 GBGT1Q8N5D6 347 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 BLNKQ8WV28 456 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 ZNF586Q9NXT0 402 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 PRELID1Q9Y255 219 aa9.97□□□□□ -0.81
CLK3-218ENST00000566926 TENM3Q9P273 2699 aa9.96□□□□□ -0.81
CLK3-218ENST00000566926 IGHV3-66A0A0C4DH42 116 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 FBLL1A6NHQ2 334 aaKnown RBP9.96□□□□□ -0.82
CLK3-218ENST00000566926 C3orf84H3BNL1 204 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 UBE2CO00762 179 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 S100A9P06702 114 aaKnown RBP9.96□□□□□ -0.82
CLK3-218ENST00000566926 ATP5G3P48201 142 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 SUMO1P63165 101 aaKnown RBP9.96□□□□□ -0.82
CLK3-218ENST00000566926 CMTM2Q8TAZ6 248 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 LINC00052Q96N35 136 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 NIPSNAP3BQ9BS92 247 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 MS4A6AQ9H2W1 248 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 Q9H3A6 140 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 NBEAL2Q6ZNJ1 2754 aa9.96□□□□□ -0.82
CLK3-218ENST00000566926 KIR2DL5BA0A0G2JN68 375 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 KIR2DL5BA0A0G2JPC4 375 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 K7EQM0 130 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 CSN1S1P47710 185 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 PNRC1Q12796 327 aaPredicted RBP9.95□□□□□ -0.82
CLK3-218ENST00000566926 WFDC3Q8IUB2 231 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 KIR2DL5AQ8N109 375 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 KIR2DL5BQ8NHK3 375 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 MRPL53Q96EL3 112 aaKnown RBP9.95□□□□□ -0.82
CLK3-218ENST00000566926 ATG101Q9BSB4 218 aa9.95□□□□□ -0.82
CLK3-218ENST00000566926 PGPA6NDG6 321 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 ZNF727A8MUV8 499 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 NDUFB4O95168 129 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 SNAPINO95295 136 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 SLC25A5P05141 298 aaKnown RBP9.94□□□□□ -0.82
CLK3-218ENST00000566926 MUC7Q8TAX7 377 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 SMIM7Q9BQ49 75 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 MAP6D1Q9H9H5 199 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 NRN1Q9NPD7 142 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 ZNF331Q9NQX6 463 aaPredicted RBP9.94□□□□□ -0.82
CLK3-218ENST00000566926 EPDR1Q9UM22 224 aa9.94□□□□□ -0.82
CLK3-218ENST00000566926 HUWE1Q7Z6Z7 4374 aaKnown RBP9.94□□□□□ -0.82
CLK3-218ENST00000566926 AGRNO00468 2067 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms