RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 OR10J4P0C629 311 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 PSG9Q00887 426 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 SPINK13Q1W4C9 94 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 BAP18Q8IXM2 172 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 ZNF738Q8NE65 137 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 OR4B1Q8NGF8 309 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 PSMG3Q9BT73 122 aaPredicted RBP7.08□□□□□ -1.28
CLN3-220ENST00000566040 MFFQ9GZY8 342 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 ARPC5O15511 151 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 IFNA5P01569 189 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 CT45A10P0DMU9 189 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 HIST1H1AQ02539 215 aaPredicted RBP7.07□□□□□ -1.28
CLN3-220ENST00000566040 PDE6HQ13956 83 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 GUK1Q16774 197 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 TMEM41BQ5BJD5 291 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 PRR9Q5T870 116 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 KCNRGQ8N5I3 272 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 SUN5Q8TC36 379 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 KCNIP2Q9NS61 270 aa7.07□□□□□ -1.28
CLN3-220ENST00000566040 FRAS1Q86XX4 4008 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 TRAV12-2A0A075B6T6 113 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 HMSDA8MTL9 139 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 C17orf112F2Z3M2 114 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 BOLA2-SMG1P6H3BVE0 249 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 HMGB3O15347 200 aaKnown RBP7.06□□□□□ -1.28
CLN3-220ENST00000566040 NBEAP1P0C6P0 100 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 STAG3L2P0CL84 134 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 STAG3L3P0CL85 134 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 M6PRP20645 277 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 S100A7P31151 101 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 ERCC8Q13216 396 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 ZNF345Q14585 488 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 EBLN2Q6P2I7 272 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 Q6ZQT7 251 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 BLNKQ8WV28 456 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 RNF141Q8WVD5 230 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 MRPL53Q96EL3 112 aaKnown RBP7.06□□□□□ -1.28
CLN3-220ENST00000566040 IGF2BP2-AS1Q96M15 143 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 NEU1Q99519 415 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 PAXXQ9BUH6 204 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 OR51M1Q9H341 326 aa7.06□□□□□ -1.28
CLN3-220ENST00000566040 IGKV2-40A0A087WW87 121 aaPredicted RBP7.05□□□□□ -1.28
CLN3-220ENST00000566040 IGKV2D-40P01614 121 aaPredicted RBP7.05□□□□□ -1.28
CLN3-220ENST00000566040 NANOS2P60321 138 aaKnown RBP7.05□□□□□ -1.28
CLN3-220ENST00000566040 RHOBP62745 196 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 ZNF266Q14584 549 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 ICAM4Q14773 271 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 FAM122CQ6P4D5 195 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 SCGB1C1Q8TD33 95 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 VGLL1Q99990 258 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 AGPAT4-IT1Q9H0P7 198 aa7.05□□□□□ -1.28
CLN3-220ENST00000566040 DNAH10Q8IVF4 4471 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 OR7C2O60412 319 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 DUSP14O95147 198 aaKnown RBP7.04□□□□□ -1.28
CLN3-220ENST00000566040 ARL14EPLP0DKL9 152 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 MIFP14174 115 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 AZU1P20160 251 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 UBE2L3P68036 154 aaKnown RBP7.04□□□□□ -1.28
CLN3-220ENST00000566040 KHDC3LQ587J8 217 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 GFI1BQ5VTD9 330 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 S100A7AQ86SG5 101 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 TCTE3Q8IZS6 198 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 ZFAND2AQ8N6M9 145 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 OR10G4Q8NGN3 311 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 OR10G9Q8NGN4 311 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 OR10G7Q8NGN6 311 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 RAB24Q969Q5 203 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 C1QTNF4Q9BXJ3 329 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 Q9H3A6 140 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 RNF24Q9Y225 148 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 NACAE9PAV3 2078 aa7.04□□□□□ -1.28
CLN3-220ENST00000566040 KLLNB2CW77 178 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 GGTLC3B5MD39 225 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 CDC34P49427 236 aaPredicted RBP7.03□□□□□ -1.28
CLN3-220ENST00000566040 FHITP49789 147 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 SERF2P84101 59 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 C12orf74Q32Q52 190 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 ACOT6Q3I5F7 207 aaPredicted RBP7.03□□□□□ -1.28
CLN3-220ENST00000566040 LGALSLQ3ZCW2 172 aaPredicted RBP7.03□□□□□ -1.28
CLN3-220ENST00000566040 C9orf47Q6ZRZ4 202 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 INO80EQ8NBZ0 244 aaPredicted RBP7.03□□□□□ -1.28
CLN3-220ENST00000566040 ODF3Q96PU9 254 aa7.03□□□□□ -1.28
CLN3-220ENST00000566040 hCG_2014768A0A024R1R8 64 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 ZNF705GA8MUZ8 300 aaPredicted RBP7.02□□□□□ -1.29
CLN3-220ENST00000566040 BCL2L11O43521 198 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 CRISP2P16562 243 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 GCHFRP30047 84 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 NUTF2P61970 127 aaKnown RBP7.02□□□□□ -1.29
CLN3-220ENST00000566040 PMS2P11Q13670 270 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 Q6ZTC4 211 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 ZNF767PQ75MW2 155 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 Q8TAT8 98 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 LRRC20Q8TCA0 184 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 TVP23CQ96ET8 276 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 TMPRSS5Q9H3S3 457 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 PRELID1Q9Y255 219 aa7.02□□□□□ -1.29
CLN3-220ENST00000566040 DNAH2Q9P225 4427 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 IGHV3OR16-12A0A075B7B8 117 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 DIRC3C9JPN6 131 aa7.01□□□□□ -1.29
CLN3-220ENST00000566040 ZNF324O75467 553 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms