RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CLINT1Q14677 625 aa13.09□□□□□ -0.31
CLN3-214ENST00000565140 NIPSNAP3BQ9BS92 247 aa13.09□□□□□ -0.31
CLN3-214ENST00000565140 PPP1R14DQ9NXH3 145 aa13.09□□□□□ -0.31
CLN3-214ENST00000565140 AZU1P20160 251 aa13.08□□□□□ -0.32
CLN3-214ENST00000565140 DNAH10Q8IVF4 4471 aa13.07□□□□□ -0.32
CLN3-214ENST00000565140 MPC2O95563 127 aa13.07□□□□□ -0.32
CLN3-214ENST00000565140 KIR3DS1Q14943 382 aa13.07□□□□□ -0.32
CLN3-214ENST00000565140 GUK1Q16774 197 aa13.07□□□□□ -0.32
CLN3-214ENST00000565140 PARD6GQ9BYG4 376 aaPredicted RBP13.07□□□□□ -0.32
CLN3-214ENST00000565140 TEX48A0A1B0GUV7 120 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 PYYP10082 97 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 CDKN1BP46527 198 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 OR10J6PQ8NGY7 276 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 LINC01587Q99440 93 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 WDR61Q9GZS3 305 aaKnown RBP13.06□□□□□ -0.32
CLN3-214ENST00000565140 TMEM14CQ9P0S9 112 aa13.06□□□□□ -0.32
CLN3-214ENST00000565140 BIRC6Q9NR09 4857 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 TRBV19A0A075B6N1 114 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 PLAC8L1A1L4L8 177 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 NDUFB4O95168 129 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 OXA1LQ15070 435 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 FAM167A-AS1Q96KT0 104 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 SLC25A2Q9BXI2 301 aa13.05□□□□□ -0.32
CLN3-214ENST00000565140 ZNF253O75346 499 aa13.04□□□□□ -0.32
CLN3-214ENST00000565140 CT45A10P0DMU9 189 aa13.04□□□□□ -0.32
CLN3-214ENST00000565140 HIST1H1EP10412 219 aaKnown RBP13.04□□□□□ -0.32
CLN3-214ENST00000565140 TSPOP30536 169 aa13.04□□□□□ -0.32
CLN3-214ENST00000565140 MIR17HGQ75NE6 70 aa13.04□□□□□ -0.32
CLN3-214ENST00000565140 NDUFAF3Q9BU61 184 aa13.04□□□□□ -0.32
CLN3-214ENST00000565140 M0R3E3 92 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 HTN1P15515 57 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 HTN3P15516 51 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 DAD1P61803 113 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 FCN2Q15485 313 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 TMEM256Q8N2U0 113 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 HSPB11Q9Y547 144 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 ALG5Q9Y673 324 aa13.03□□□□□ -0.32
CLN3-214ENST00000565140 RPL12P30050 165 aaKnown RBP13.02□□□□□ -0.33
CLN3-214ENST00000565140 TAS2R60P59551 318 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 GFI1BQ5VTD9 330 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 BLNKQ8WV28 456 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 ATP5SQ99766 215 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 MBD2Q9UBB5 411 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 TIMM9Q9Y5J7 89 aa13.02□□□□□ -0.33
CLN3-214ENST00000565140 LYRM9A8MSI8 78 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 NPIPB6E9PJ23 425 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 PET100P0DJ07 73 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 ERCC8Q13216 396 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 EXOC3-AS1Q8N2X6 119 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 SMIM3Q9BZL3 60 aa13.01□□□□□ -0.33
CLN3-214ENST00000565140 J3KRW8 73 aa13□□□□□ -0.33
CLN3-214ENST00000565140 DEFB130BP0DP73 79 aa13□□□□□ -0.33
CLN3-214ENST00000565140 DEFB130AP0DP74 79 aa13□□□□□ -0.33
CLN3-214ENST00000565140 PDE6HQ13956 83 aa13□□□□□ -0.33
CLN3-214ENST00000565140 MRPL53Q96EL3 112 aaKnown RBP13□□□□□ -0.33
CLN3-214ENST00000565140 FAM210BQ96KR6 192 aa13□□□□□ -0.33
CLN3-214ENST00000565140 OR51M1Q9H341 326 aa13□□□□□ -0.33
CLN3-214ENST00000565140 WFDC1Q9HC57 220 aa13□□□□□ -0.33
CLN3-214ENST00000565140 C17orf112F2Z3M2 114 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 H7BYZ3 331 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 NBEAP1P0C6P0 100 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 ODF3Q96PU9 254 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 C20orf144Q9BQM9 153 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 KCNIP2Q9NS61 270 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 FUT9Q9Y231 359 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 PRELID1Q9Y255 219 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 NACAE9PAV3 2078 aa12.99□□□□□ -0.33
CLN3-214ENST00000565140 PTTG1O95997 202 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 OR10J4P0C629 311 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 P0DMU3 169 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 FAM231AP0DMU4 169 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 FAM231CP0DMU5 169 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 ICAM4Q14773 271 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 TMEM88Q6PEY1 159 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 RNASE8Q8TDE3 154 aaKnown RBP12.98□□□□□ -0.33
CLN3-214ENST00000565140 FXYD5Q96DB9 178 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 PAXXQ9BUH6 204 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 MRPL32Q9BYC8 188 aaKnown RBP12.98□□□□□ -0.33
CLN3-214ENST00000565140 AGPAT4-IT1Q9H0P7 198 aa12.98□□□□□ -0.33
CLN3-214ENST00000565140 TRAV12-3A0A0B4J271 114 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 LEPP41159 167 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 FFAR4Q5NUL3 377 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 POM121L12Q8N7R1 296 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 SCGB1C1Q8TD33 95 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 RNF141Q8WVD5 230 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 ZNF503Q96F45 646 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 C16orf74Q96GX8 76 aa12.97□□□□□ -0.33
CLN3-214ENST00000565140 NOP10Q9NPE3 64 aaKnown RBP12.97□□□□□ -0.33
CLN3-214ENST00000565140 IFNA5P01569 189 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 FAM122CQ6P4D5 195 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 ZNF493Q6ZR52 646 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 TMEM263Q8WUH6 116 aaKnown RBP12.96□□□□□ -0.33
CLN3-214ENST00000565140 FAM19A4Q96LR4 140 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 LINC00477Q96M19 166 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 AAMDCQ9H7C9 122 aa12.96□□□□□ -0.33
CLN3-214ENST00000565140 TIMM8BQ9Y5J9 83 aaPredicted RBP12.96□□□□□ -0.33
CLN3-214ENST00000565140 IGKV2-40A0A087WW87 121 aaPredicted RBP12.95□□□□□ -0.34
CLN3-214ENST00000565140 EIF3GO75821 320 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLN3-214ENST00000565140 IGKV2D-40P01614 121 aaPredicted RBP12.95□□□□□ -0.34
CLN3-214ENST00000565140 C9orf47Q6ZRZ4 202 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms