RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMEM256Q8N2U0 113 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 C2CD4CQ8TF44 421 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 OR51M1Q9H341 326 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 AAMDCQ9H7C9 122 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 FUT9Q9Y231 359 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 TRAV10A0A0B4J240 114 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 NBEAP1P0C6P0 100 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 CDKN1BP46527 198 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 TAS2R45P59539 299 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 MIR17HGQ75NE6 70 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 AQP10Q96PS8 301 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 LYSTQ99698 3801 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 PAXXQ9BUH6 204 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 SLC25A2Q9BXI2 301 aa9.64□□□□□ -0.87
CLK3-213ENST00000563842 DYNC2H1Q8NCM8 4307 aaKnown RBP9.63□□□□□ -0.87
CLK3-213ENST00000563842 LOC102723971A0A1B0GUV8 181 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 CRXO43186 299 aaPredicted RBP9.63□□□□□ -0.87
CLK3-213ENST00000563842 PYYP10082 97 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 OXA1LQ15070 435 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 ACOT6Q3I5F7 207 aaPredicted RBP9.63□□□□□ -0.87
CLK3-213ENST00000563842 INO80EQ8NBZ0 244 aaPredicted RBP9.63□□□□□ -0.87
CLK3-213ENST00000563842 BLNKQ8WV28 456 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 FAM167A-AS1Q96KT0 104 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 ODF3Q96PU9 254 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 C20orf144Q9BQM9 153 aa9.63□□□□□ -0.87
CLK3-213ENST00000563842 OR7C2O60412 319 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 EMP1P54849 157 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 KHDC3LQ587J8 217 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 BAP18Q8IXM2 172 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 RNF141Q8WVD5 230 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 WFDC1Q9HC57 220 aa9.62□□□□□ -0.87
CLK3-213ENST00000563842 TRAV12-2A0A075B6T6 113 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 A0A1W2PPV4 95 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 PRAC2D3DTV9 90 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 NDUFB4O95168 129 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 M6PRP20645 277 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 LEPP41159 167 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 C12orf74Q32Q52 190 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 Q6ZTC4 211 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 LYPD1Q8N2G4 141 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 RPP25LQ8N5L8 163 aaKnown RBP9.61□□□□□ -0.87
CLK3-213ENST00000563842 LINC00476Q8WZB0 136 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 LINC00477Q96M19 166 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 LINC01587Q99440 93 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 CELA1Q9UNI1 258 aa9.61□□□□□ -0.87
CLK3-213ENST00000563842 NPIPB6E9PJ23 425 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 OR10J4P0C629 311 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 TAS2R60P59551 318 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 ICAM4Q14773 271 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 OR2T35Q8NGX2 323 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 FXYD5Q96DB9 178 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 NIPSNAP3BQ9BS92 247 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 DKK2Q9UBU2 259 aa9.6□□□□□ -0.87
CLK3-213ENST00000563842 YTHDF2Q9Y5A9 579 aaKnown RBP9.6□□□□□ -0.87
CLK3-213ENST00000563842 FXYD6-FXYD2A0A087WZ82 144 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 DEFB131BA0A096LNP1 70 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 ZNF705GA8MUZ8 300 aaPredicted RBP9.59□□□□□ -0.87
CLK3-213ENST00000563842 IGLL5B9A064 214 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 H7BYZ3 331 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 M0R3E3 92 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 LY6G6CO95867 125 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 MBP02144 154 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 CSN1S1P47710 185 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 UBE2L3P68036 154 aaKnown RBP9.59□□□□□ -0.87
CLK3-213ENST00000563842 SERF2P84101 59 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 FAM222AQ5U5X8 452 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 PQLC2Q6ZP29 291 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 EXOC3-AS1Q8N2X6 119 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 OR2G3Q8NGZ4 309 aa9.59□□□□□ -0.87
CLK3-213ENST00000563842 PSMG3Q9BT73 122 aaPredicted RBP9.59□□□□□ -0.87
CLK3-213ENST00000563842 BORCS7-ASMTA0A0B4J1R7 106 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 LYRM9A8MSI8 78 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 CT45A10P0DMU9 189 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 Q5BKY6 102 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 FAM74A1Q5RGS3 127 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 TMEM78Q5T7P6 136 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 FAM122CQ6P4D5 195 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 ZNF493Q6ZR52 646 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 CCDC28AQ8IWP9 274 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 HSD17B11Q8NBQ5 300 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 OR10G4Q8NGN3 311 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 OR10G9Q8NGN4 311 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 OR10G7Q8NGN6 311 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 TNFSF18Q9UNG2 199 aa9.58□□□□□ -0.88
CLK3-213ENST00000563842 SLC25A5P05141 298 aaKnown RBP9.57□□□□□ -0.88
CLK3-213ENST00000563842 NMBP08949 121 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 PRB4P10163 310 aaPredicted RBP9.57□□□□□ -0.88
CLK3-213ENST00000563842 DAD1P61803 113 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 LGALS9CQ6DKI2 356 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 C9orf47Q6ZRZ4 202 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 ZNF767PQ75MW2 155 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 RXFP4Q8TDU9 374 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 GNPNAT1Q96EK6 184 aaPredicted RBP9.57□□□□□ -0.88
CLK3-213ENST00000563842 PHYHIPLQ96FC7 376 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 C16orf74Q96GX8 76 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 FAM210BQ96KR6 192 aa9.57□□□□□ -0.88
CLK3-213ENST00000563842 RBAKDNA6NC62 111 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 HTN1P15515 57 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 ATP6V0CP27449 155 aa9.56□□□□□ -0.88
CLK3-213ENST00000563842 CDC34P49427 236 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms