RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DNAH6Q9C0G6 4158 aa11.99□□□□□ -0.49
CLK3-210ENST00000563112 H3BQ15 152 aa11.98□□□□□ -0.49
CLK3-210ENST00000563112 SLC17A3O00476 420 aa11.98□□□□□ -0.49
CLK3-210ENST00000563112 IFITM3Q01628 133 aa11.98□□□□□ -0.49
CLK3-210ENST00000563112 POM121L12Q8N7R1 296 aa11.98□□□□□ -0.49
CLK3-210ENST00000563112 PRB4P10163 310 aaPredicted RBP11.97□□□□□ -0.49
CLK3-210ENST00000563112 TAS2R60P59551 318 aa11.97□□□□□ -0.49
CLK3-210ENST00000563112 NHLH2Q02577 135 aa11.97□□□□□ -0.49
CLK3-210ENST00000563112 LRRC37A5PQ49AS3 106 aa11.97□□□□□ -0.49
CLK3-210ENST00000563112 OR5C1Q8NGR4 320 aa11.97□□□□□ -0.49
CLK3-210ENST00000563112 SAT2Q96F10 170 aaPredicted RBP11.97□□□□□ -0.49
CLK3-210ENST00000563112 ZNF253O75346 499 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 PRM2P04554 102 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 HTN1P15515 57 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 Q6ZNX1 250 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 UBE2DNLQ8IWF7 75 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 C20orf144Q9BQM9 153 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 MARVELD1Q9BSK0 173 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 NPCDR1Q9BY65 106 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 TMEM14CQ9P0S9 112 aa11.96□□□□□ -0.49
CLK3-210ENST00000563112 PRAC2D3DTV9 90 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 H7BYZ3 331 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 SSNA1O43805 119 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 DEFB130BP0DP73 79 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 DEFB130AP0DP74 79 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 AZU1P20160 251 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 ZNF493Q6ZR52 646 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 C16orf74Q96GX8 76 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 KCNIP2Q9NS61 270 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 ZNF586Q9NXT0 402 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 OR5AC2Q9NZP5 309 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 TIMM9Q9Y5J7 89 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 FRAS1Q86XX4 4008 aa11.95□□□□□ -0.5
CLK3-210ENST00000563112 HIST1H1EP10412 219 aaKnown RBP11.94□□□□□ -0.5
CLK3-210ENST00000563112 CLINT1Q14677 625 aa11.94□□□□□ -0.5
CLK3-210ENST00000563112 CCDC28AQ8IWP9 274 aa11.94□□□□□ -0.5
CLK3-210ENST00000563112 THAP6Q8TBB0 222 aa11.94□□□□□ -0.5
CLK3-210ENST00000563112 PRELID1Q9Y255 219 aa11.94□□□□□ -0.5
CLK3-210ENST00000563112 TRBV19A0A075B6N1 114 aa11.93□□□□□ -0.5
CLK3-210ENST00000563112 PET100P0DJ07 73 aa11.93□□□□□ -0.5
CLK3-210ENST00000563112 LEPP41159 167 aa11.93□□□□□ -0.5
CLK3-210ENST00000563112 TMEM88Q6PEY1 159 aa11.93□□□□□ -0.5
CLK3-210ENST00000563112 MRPL53Q96EL3 112 aaKnown RBP11.93□□□□□ -0.5
CLK3-210ENST00000563112 TIMM8BQ9Y5J9 83 aaPredicted RBP11.93□□□□□ -0.5
CLK3-210ENST00000563112 NPIPB6E9PJ23 425 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 C17orf112F2Z3M2 114 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 H0YIZ8 118 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 PTTG1O95997 202 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 PDE6HQ13956 83 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 C15orf53Q8NAA6 179 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 PPP1R1CQ8WVI7 109 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 ODF3Q96PU9 254 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 PARD6GQ9BYG4 376 aaPredicted RBP11.92□□□□□ -0.5
CLK3-210ENST00000563112 AAMDCQ9H7C9 122 aa11.92□□□□□ -0.5
CLK3-210ENST00000563112 PLAC8L1A1L4L8 177 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 CBY3A6NI87 242 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 ATP5G1P05496 136 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 CT45A10P0DMU9 189 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 PYYP10082 97 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 ATP5G3P48201 142 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 H2BFSP57053 126 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 FCN2Q15485 313 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 RNF212Q495C1 297 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 GCSAMLQ5JQS6 135 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 GFI1BQ5VTD9 330 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 TMEM263Q8WUH6 116 aaKnown RBP11.91□□□□□ -0.5
CLK3-210ENST00000563112 BLNKQ8WV28 456 aa11.91□□□□□ -0.5
CLK3-210ENST00000563112 WDR61Q9GZS3 305 aaKnown RBP11.91□□□□□ -0.5
CLK3-210ENST00000563112 F5H768 121 aa11.9□□□□□ -0.5
CLK3-210ENST00000563112 J3KRW8 73 aa11.9□□□□□ -0.5
CLK3-210ENST00000563112 KIR3DS1Q14943 382 aa11.9□□□□□ -0.5
CLK3-210ENST00000563112 LINC00477Q96M19 166 aa11.9□□□□□ -0.5
CLK3-210ENST00000563112 NOP10Q9NPE3 64 aaKnown RBP11.9□□□□□ -0.5
CLK3-210ENST00000563112 TRAV12-3A0A0B4J271 114 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 M0R3E3 92 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 NDUFB4O95168 129 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 MPC2O95563 127 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 LINC00336Q6ZUF6 198 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 MIR17HGQ75NE6 70 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 RNASE8Q8TDE3 154 aaKnown RBP11.89□□□□□ -0.51
CLK3-210ENST00000563112 ATP5SQ99766 215 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 SLC25A2Q9BXI2 301 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 MRPL32Q9BYC8 188 aaKnown RBP11.89□□□□□ -0.51
CLK3-210ENST00000563112 OR51M1Q9H341 326 aa11.89□□□□□ -0.51
CLK3-210ENST00000563112 SNURFLB1AK76 121 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 M0R2N4 97 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 IFNA5P01569 189 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 SLC25A5P05141 298 aaKnown RBP11.88□□□□□ -0.51
CLK3-210ENST00000563112 NBEAP1P0C6P0 100 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 SCGB1C1Q8TD33 95 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 FUT9Q9Y231 359 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 HSPB11Q9Y547 144 aa11.88□□□□□ -0.51
CLK3-210ENST00000563112 A0A1B0GVG6 124 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 RPL12P30050 165 aaKnown RBP11.87□□□□□ -0.51
CLK3-210ENST00000563112 ERCC8Q13216 396 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 ICAM4Q14773 271 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 LGALS9BQ3B8N2 356 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 EXOC3-AS1Q8N2X6 119 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 FAM167A-AS1Q96KT0 104 aa11.87□□□□□ -0.51
CLK3-210ENST00000563112 PYGO2Q9BRQ0 406 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms