RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 CRHP06850 196 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 SPINT3P49223 89 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 LSM6P62312 80 aaKnown RBP2.4□□□□□ -2.03
SMG1-204ENST00000561940 UBA52P62987 128 aaKnown RBP2.4□□□□□ -2.03
SMG1-204ENST00000561940 REEP5Q00765 189 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 PLGLB1Q02325 96 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 EDDM3AQ14507 147 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 Q6ZTI0 123 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 BORCS7Q96B45 105 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 LYSMD1Q96S90 227 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 CMSS1Q9BQ75 279 aaKnown RBP2.4□□□□□ -2.03
SMG1-204ENST00000561940 DOHHQ9BU89 302 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 FAIMQ9NVQ4 179 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 CCDC88CQ9P219 2028 aa2.4□□□□□ -2.03
SMG1-204ENST00000561940 RYR1P21817 5038 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 A0A0J9YY10 115 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 LEPROTO15243 131 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 HLA-DRB1P01911 266 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H1TP22492 207 aaPredicted RBP2.39□□□□□ -2.03
SMG1-204ENST00000561940 SNRPD2P62316 118 aaKnown RBP2.39□□□□□ -2.03
SMG1-204ENST00000561940 RANP62826 216 aaKnown RBP2.39□□□□□ -2.03
SMG1-204ENST00000561940 GUK1Q16774 197 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 Q6ZS49 121 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 VCX3BQ9H321 246 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 EFCAB1Q9HAE3 211 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 COL7A1Q02388 2944 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 HYDINQ4G0P3 5121 aa2.39□□□□□ -2.03
SMG1-204ENST00000561940 TRAV7A0A075B6U4 112 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 TRAV38-1A0A0B4J264 116 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 PVALEFA0A1B0GWK0 134 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 IRGMA1A4Y4 181 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 ZNF860A6NHJ4 632 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 MSMBP08118 114 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 LGALS1P09382 135 aaKnown RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 CR1P17927 2039 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 RPL28P46779 137 aaKnown RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 EFNA4P52798 201 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 RAB14P61106 215 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 MRPS25P82663 173 aaKnown RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 DEFB110Q30KQ9 67 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 PLPP5Q8NEB5 264 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 MCFD2Q8NI22 146 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 MRPL30Q8TCC3 161 aaKnown RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 ZNF625Q96I27 306 aaPredicted RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 ERMAPQ96PL5 475 aaPredicted RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 PPP1R2P1Q96PQ5 205 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 WDR61Q9GZS3 305 aaKnown RBP2.38□□□□□ -2.03
SMG1-204ENST00000561940 IL36BQ9NZH7 164 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 NAT8Q9UHE5 227 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 MYH11P35749 1972 aa2.38□□□□□ -2.03
SMG1-204ENST00000561940 HERC2O95714 4834 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 ZNF705FA8MVS1 300 aaPredicted RBP2.37□□□□□ -2.03
SMG1-204ENST00000561940 B4DSR2 109 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 H7C2G1 150 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 ATP5HO75947 161 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 TTRP02766 147 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 PRM2P04554 102 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 CTXN2P0C2S0 81 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 SULT1A3P0DMM9 295 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 SULT1A4P0DMN0 295 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 NFYAP23511 347 aaPredicted RBP2.37□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H3AP68431 136 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 CCL20P78556 96 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 H3F3AP84243 136 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 RPL18Q07020 188 aaKnown RBP2.37□□□□□ -2.03
SMG1-204ENST00000561940 SLC38A11Q08AI6 406 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 LPCAT3Q6P1A2 487 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 DYNAPQ8N1N2 210 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 RPP25LQ8N5L8 163 aaKnown RBP2.37□□□□□ -2.03
SMG1-204ENST00000561940 ANKRD29Q8N6D5 301 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 ZNF676Q8N7Q3 588 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 SELENOSQ9BQE4 189 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 CMTM6Q9NX76 183 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 GLTPQ9NZD2 209 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 MRPL27Q9P0M9 148 aaKnown RBP2.37□□□□□ -2.03
SMG1-204ENST00000561940 DOK5Q9P104 306 aa2.37□□□□□ -2.03
SMG1-204ENST00000561940 OR4C46A6NHA9 309 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 PGLYRP1O75594 196 aaPredicted RBP2.36□□□□□ -2.03
SMG1-204ENST00000561940 HLA-DMBP28068 263 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 RPL5P46777 297 aaKnown RBP2.36□□□□□ -2.03
SMG1-204ENST00000561940 TMEM97Q5BJF2 176 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 DEFB121Q5J5C9 76 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 NCMAPQ5T1S8 102 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 IBA57Q5T440 356 aaKnown RBP2.36□□□□□ -2.03
SMG1-204ENST00000561940 OR8B12Q8NGG6 310 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 CBLN4Q9NTU7 201 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 PKIGQ9Y2B9 76 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 TIMM22Q9Y584 194 aa2.36□□□□□ -2.03
SMG1-204ENST00000561940 IGHV1-18A0A0C4DH31 117 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 GGT3PA6NGU5 568 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 FABP5P3A8MUU1 101 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 SLC22A1O15245 554 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 CRYZL1O95825 349 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 IGHV3-7P01780 117 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H2BOP23527 126 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H2BBP33778 126 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H2BDP58876 126 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST1H2BCP62807 126 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST2H2BEQ16778 126 aa2.35□□□□□ -2.03
SMG1-204ENST00000561940 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms