RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PARD6GQ9BYG4 376 aaPredicted RBP11.28□□□□□ -0.6
CLN3-208ENST00000561505 PGPEP1Q9NXJ5 209 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 ZNF586Q9NXT0 402 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 PXMP4Q9Y6I8 212 aa11.28□□□□□ -0.6
CLN3-208ENST00000561505 A0A0J9YY99 117 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 H3BQ15 152 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 AGPAT2O15120 278 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 SSSCA1O60232 199 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 PRB4P10163 310 aaPredicted RBP11.27□□□□□ -0.61
CLN3-208ENST00000561505 RRAS2P62070 204 aaPredicted RBP11.27□□□□□ -0.61
CLN3-208ENST00000561505 SLC38A11Q08AI6 406 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 MORN5Q5VZ52 161 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 C11orf72Q8NBR9 251 aa11.27□□□□□ -0.61
CLN3-208ENST00000561505 FAT1Q14517 4588 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 SNURFLB1AK76 121 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 GOSR2O14653 212 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 ZNF253O75346 499 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 NDUFB6O95139 128 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 XGP55808 180 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 LINC00315P59091 139 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 Q6ZTI0 123 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 FAM19A4Q96LR4 140 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 TMPRSS5Q9H3S3 457 aa11.26□□□□□ -0.61
CLN3-208ENST00000561505 RCL1Q9Y2P8 373 aaKnown RBP11.26□□□□□ -0.61
CLN3-208ENST00000561505 LINC00854A0A1B0GVQ3 168 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 OPCMLQ14982 345 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 GUK1Q16774 197 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 LYPD1Q8N2G4 141 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 MGST2Q99735 147 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 MGAT4CQ9UBM8 478 aa11.25□□□□□ -0.61
CLN3-208ENST00000561505 VPS13BQ7Z7G8 4022 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 C7orf66A4D0T2 115 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 NAP1L6A6NFF2 107 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 KLLNB2CW77 178 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 ZNF324O75467 553 aaPredicted RBP11.24□□□□□ -0.61
CLN3-208ENST00000561505 OR4E1P0C645 316 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 LEPP41159 167 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 ANXA2RQ3ZCQ2 193 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 CDPF1Q6NVV7 123 aa11.24□□□□□ -0.61
CLN3-208ENST00000561505 MRPL53Q96EL3 112 aaKnown RBP11.24□□□□□ -0.61
CLN3-208ENST00000561505 DMBT1Q9UGM3 2413 aaPredicted RBP11.23□□□□□ -0.61
CLN3-208ENST00000561505 TRAV12-3A0A0B4J271 114 aa11.23□□□□□ -0.61
CLN3-208ENST00000561505 EPM2AB3EWF7 344 aa11.23□□□□□ -0.61
CLN3-208ENST00000561505 SLC25A5P05141 298 aaKnown RBP11.23□□□□□ -0.61
CLN3-208ENST00000561505 SNRPCP09234 159 aaKnown RBP11.23□□□□□ -0.61
CLN3-208ENST00000561505 DNAJC4Q9NNZ3 241 aa11.23□□□□□ -0.61
CLN3-208ENST00000561505 FLVCR2Q9UPI3 526 aa11.23□□□□□ -0.61
CLN3-208ENST00000561505 H3BTX0 84 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 SIVA1O15304 175 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 COX7A2P2O60397 106 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 SPINK4O60575 86 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 IAH1Q2TAA2 248 aaPredicted RBP11.22□□□□□ -0.61
CLN3-208ENST00000561505 C10orf113Q5VZT2 155 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 ZNF680Q8NEM1 530 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 CHAC2Q8WUX2 184 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 MITD1Q8WV92 249 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 SRRQ9GZT4 340 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 C11orf1Q9H5F2 150 aa11.22□□□□□ -0.61
CLN3-208ENST00000561505 MBPP02686 304 aaPredicted RBP11.21□□□□□ -0.61
CLN3-208ENST00000561505 NMBP08949 121 aa11.21□□□□□ -0.61
CLN3-208ENST00000561505 GSN-AS1Q9NRJ2 163 aa11.21□□□□□ -0.61
CLN3-208ENST00000561505 C7orf71A4D174 169 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 CRISP2P16562 243 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 BTCP35070 178 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 TCL1AP56279 114 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 BAK1Q16611 211 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 VWC2Q2TAL6 325 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 IBA57Q5T440 356 aaKnown RBP11.2□□□□□ -0.62
CLN3-208ENST00000561505 LINC00477Q96M19 166 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 FUT9Q9Y231 359 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 WDR83OSQ9Y284 106 aa11.2□□□□□ -0.62
CLN3-208ENST00000561505 TRBV19A0A075B6N1 114 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 TRAV5A0A0B4J249 113 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 NOL3O60936 208 aaKnown RBP11.19□□□□□ -0.62
CLN3-208ENST00000561505 NDUFB4O95168 129 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 S100A5P33763 92 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 RPL29P47914 159 aaKnown RBP11.19□□□□□ -0.62
CLN3-208ENST00000561505 CAMLGP49069 296 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 EIF4E3Q8N5X7 224 aaKnown RBP11.19□□□□□ -0.62
CLN3-208ENST00000561505 AGPAT4-IT1Q9H0P7 198 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 TMEM14CQ9P0S9 112 aa11.19□□□□□ -0.62
CLN3-208ENST00000561505 TRGV2A0A075B6R0 118 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 K7EP13 123 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 NXPH4O95158 308 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 INAFM2P0DMQ5 153 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 PDE6HQ13956 83 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 CNPY1Q3B7I2 92 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 Q6ZRG5 221 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 C9orf47Q6ZRZ4 202 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 NRARPQ7Z6K4 114 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 ST6GAL2Q96JF0 529 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 PFDN5Q99471 154 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 PRELID1Q9Y255 219 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 KLF12Q9Y4X4 402 aa11.18□□□□□ -0.62
CLN3-208ENST00000561505 MYCBP2O75592 4640 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 M0R3E3 92 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 ERVFC1-1P60608 527 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 CD300CQ08708 224 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 SLAQ13239 276 aa11.17□□□□□ -0.62
CLN3-208ENST00000561505 RAB31Q13636 194 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms