RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 A0A087WW49 117 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 ZNF320A2RRD8 509 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 H7BYZ3 331 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 ZNF207O43670 478 aaKnown RBP8.59□□□□□ -1.03
USP3-218ENST00000560202 PAGE4O60829 102 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 GP9P14770 177 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 NPPCP23582 126 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 CRYBB3P26998 211 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 HIST2H2BDQ6DRA6 164 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 KLHL30-AS1Q8NEE0 82 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 FXYD5Q96DB9 178 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 TMEM14CQ9P0S9 112 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 RNF24Q9Y225 148 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 A0A1B0GUS0 222 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 BUB3O43684 328 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 UBE2G2P60604 165 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 BPIFA4PQ86YQ2 179 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 CITED2Q99967 270 aaPredicted RBP8.59□□□□□ -1.03
USP3-218ENST00000560202 MIEN1Q9BRT3 115 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 NAGKQ9UJ70 344 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 TSSC4Q9Y5U2 329 aaPredicted RBP8.59□□□□□ -1.03
USP3-218ENST00000560202 U3KQE9 123 aa8.59□□□□□ -1.03
USP3-218ENST00000560202 APOHP02749 345 aaPredicted RBP8.58□□□□□ -1.04
USP3-218ENST00000560202 G0S2P27469 103 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 HOXD3P31249 432 aaPredicted RBP8.58□□□□□ -1.04
USP3-218ENST00000560202 GALR1P47211 349 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 PAFAH1B2P68402 229 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 DEFB136Q30KP8 78 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 OR8I2Q8N0Y5 310 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.58□□□□□ -1.04
USP3-218ENST00000560202 OR11H1Q8NG94 326 aa8.58□□□□□ -1.04
USP3-218ENST00000560202 YTHDF2Q9Y5A9 579 aaKnown RBP8.58□□□□□ -1.04
USP3-218ENST00000560202 NIPBLQ6KC79 2804 aaeCLIP8.58□□□□□ -1.04
USP3-218ENST00000560202 IGHV3OR16-13A0A075B7E8 117 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 IGHV3-49A0A0A0MS15 119 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 IGHV3-74A0A0B4J1X5 117 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 IGHV3-66A0A0C4DH42 116 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 LINC01619G3V211 115 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 K7EMT4 169 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 MRPS12O15235 138 aaKnown RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 NBEAP1P0C6P0 100 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 HIST1H1EP10412 219 aaKnown RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 RPL7P18124 248 aaKnown RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 CNN1P51911 297 aaKnown RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 MEF2BQ02080 365 aaPredicted RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 TM4SF20Q53R12 229 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 SAPCD1Q5SSQ6 148 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 CST9LP1Q5W188 147 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 C8orf86Q6ZUL3 223 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 OR4F17Q8NGA8 305 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 OR1N2Q8NGR9 330 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 DPF1Q92782 380 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 OR4F4Q96R69 305 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 DAZ1Q9NQZ3 744 aaKnown RBP8.57□□□□□ -1.04
USP3-218ENST00000560202 UFC1Q9Y3C8 167 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 ARL2-SNX15V9GYD0 113 aa8.57□□□□□ -1.04
USP3-218ENST00000560202 TRAV9-1A0A075B6T8 112 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 A0A1W2PRX2 142 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 C11orf94C9JXX5 98 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 IGLC2P0DOY2 106 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 ATP5G3P48201 142 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 FOXL1Q12952 345 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 KLF5Q13887 457 aaPredicted RBP8.56□□□□□ -1.04
USP3-218ENST00000560202 COTL1Q14019 142 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 TMEM183BQ1AE95 376 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 COL5A1-AS1Q5SY13 56 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 BLNKQ8WV28 456 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 SMIM7Q9BQ49 75 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 ZNF586Q9NXT0 402 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 MAST4O15021 2626 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 IGHV7-4-1A0A0J9YVY3 117 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 A0A1W2PRE2 83 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 A0A1W2PS18 150 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 H3BTX0 84 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 LGALS9O00182 355 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 SCGB1D1O95968 90 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 SLURP1P55000 103 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 SYNJ2BPP57105 145 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 KRTAP10-3P60369 221 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 GPR82Q96P67 336 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 DUX3Q96PT4 197 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 TXNDC17Q9BRA2 123 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 ATG101Q9BSB4 218 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 ZFP30Q9Y2G7 519 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 SMAD5-AS1Q9Y6J3 95 aa8.56□□□□□ -1.04
USP3-218ENST00000560202 ESDP10768 282 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 ADIRFQ15847 76 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 C16orf54Q6UWD8 224 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 TEX43Q6ZNM6 134 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 GRAMD2BQ96HH9 432 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 RAX2Q96IS3 184 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 SMPXQ9UHP9 88 aa8.55□□□□□ -1.04
USP3-218ENST00000560202 TRBV19A0A075B6N1 114 aa8.54□□□□□ -1.04
USP3-218ENST00000560202 TMEM213A2RRL7 107 aa8.54□□□□□ -1.04
USP3-218ENST00000560202 GGTLC3B5MD39 225 aa8.54□□□□□ -1.04
USP3-218ENST00000560202 RPL23P62829 140 aaKnown RBP8.54□□□□□ -1.04
USP3-218ENST00000560202 SUMO1P63165 101 aaKnown RBP8.54□□□□□ -1.04
USP3-218ENST00000560202 GLMPQ8WWB7 406 aa8.54□□□□□ -1.04
USP3-218ENST00000560202 C17orf77Q96MU5 243 aa8.54□□□□□ -1.04
USP3-218ENST00000560202 RHPN1-AS1Q9BWJ2 59 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms