RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 FCN2Q15485 313 aa8.88□□□□□ -0.99
SNX1-209ENST00000559961 TMEM37Q8WXS4 190 aa8.88□□□□□ -0.99
SNX1-209ENST00000559961 UBE2L5PA0A1B0GUS4 154 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 H3BTX0 84 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 J3KRW8 73 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 MRPS12O15235 138 aaKnown RBP8.87□□□□□ -0.99
SNX1-209ENST00000559961 RTL8CO15255 209 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 PLA2G10O15496 165 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 MPDU1O75352 247 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 FGF7P21781 194 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 RPL29P47914 159 aaKnown RBP8.87□□□□□ -0.99
SNX1-209ENST00000559961 MIC13Q5XKP0 118 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 S100ZQ8WXG8 99 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 GNPNAT1Q96EK6 184 aaPredicted RBP8.87□□□□□ -0.99
SNX1-209ENST00000559961 SEC22CQ9BRL7 303 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 AAMDCQ9H7C9 122 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 LYRM2Q9NU23 88 aaPredicted RBP8.87□□□□□ -0.99
SNX1-209ENST00000559961 SLC39A9Q9NUM3 307 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 PRELID1Q9Y255 219 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 WDR83OSQ9Y284 106 aa8.87□□□□□ -0.99
SNX1-209ENST00000559961 ZNF253O75346 499 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 HIST1H1EP10412 219 aaKnown RBP8.86□□□□□ -0.99
SNX1-209ENST00000559961 Q6ZR54 194 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 ODF3Q96PU9 254 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 PYGO2Q9BRQ0 406 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 SLC25A31Q9H0C2 315 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 KCNIP2Q9NS61 270 aa8.86□□□□□ -0.99
SNX1-209ENST00000559961 TRAV12-3A0A0B4J271 114 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 SLC25A5P05141 298 aaKnown RBP8.85□□□□□ -0.99
SNX1-209ENST00000559961 IGLC2P0DOY2 106 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 M6PRP20645 277 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 TMEM252Q8N6L7 170 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 ENKURQ8TC29 256 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 RNASE8Q8TDE3 154 aaKnown RBP8.85□□□□□ -0.99
SNX1-209ENST00000559961 MRPL53Q96EL3 112 aaKnown RBP8.85□□□□□ -0.99
SNX1-209ENST00000559961 VPS13DQ5THJ4 4388 aa8.85□□□□□ -0.99
SNX1-209ENST00000559961 DNAH10Q8IVF4 4471 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 TRGV2A0A075B6R0 118 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 TRAV5A0A0B4J249 113 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 NBDYA0A0U1RRE5 68 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 A0A1B0GVY2 172 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GAGE12BA1L429 117 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 H3BQ15 152 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 SLC17A3O00476 420 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GAGE7O76087 117 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GAGE12FP0CL80 117 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GAGE12GP0CL81 117 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GAGE12IP0CL82 117 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 PRB4P10163 310 aaPredicted RBP8.84□□□□□ -0.99
SNX1-209ENST00000559961 CYCSP99999 105 aaKnown RBP8.84□□□□□ -0.99
SNX1-209ENST00000559961 RAB32Q13637 225 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 PDE6HQ13956 83 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 TMEM78Q5T7P6 136 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 GFI1BQ5VTD9 330 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 ZNF680Q8NEM1 530 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 BLNKQ8WV28 456 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 SAT2Q96F10 170 aaPredicted RBP8.84□□□□□ -0.99
SNX1-209ENST00000559961 LINC00477Q96M19 166 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 TMEM14CQ9P0S9 112 aa8.84□□□□□ -0.99
SNX1-209ENST00000559961 FRAS1Q86XX4 4008 aa8.83□□□□□ -1
SNX1-209ENST00000559961 TRBV19A0A075B6N1 114 aa8.83□□□□□ -1
SNX1-209ENST00000559961 TRAV26-1A0A087WT03 109 aa8.83□□□□□ -1
SNX1-209ENST00000559961 PLAC8L1A1L4L8 177 aa8.83□□□□□ -1
SNX1-209ENST00000559961 PRAC2D3DTV9 90 aa8.83□□□□□ -1
SNX1-209ENST00000559961 E5RGE8 158 aa8.83□□□□□ -1
SNX1-209ENST00000559961 NPIPB6E9PJ23 425 aa8.83□□□□□ -1
SNX1-209ENST00000559961 C17orf112F2Z3M2 114 aa8.83□□□□□ -1
SNX1-209ENST00000559961 GPX1P07203 203 aa8.83□□□□□ -1
SNX1-209ENST00000559961 CT45A10P0DMU9 189 aa8.83□□□□□ -1
SNX1-209ENST00000559961 VWC2Q2TAL6 325 aa8.83□□□□□ -1
SNX1-209ENST00000559961 TTC32Q5I0X7 151 aa8.83□□□□□ -1
SNX1-209ENST00000559961 LINC00299Q6ZSB3 139 aa8.83□□□□□ -1
SNX1-209ENST00000559961 SSX7Q7RTT5 188 aa8.83□□□□□ -1
SNX1-209ENST00000559961 C6orf223Q8N319 242 aa8.83□□□□□ -1
SNX1-209ENST00000559961 CHAC2Q8WUX2 184 aa8.83□□□□□ -1
SNX1-209ENST00000559961 RNF141Q8WVD5 230 aa8.83□□□□□ -1
SNX1-209ENST00000559961 ZNF503Q96F45 646 aa8.83□□□□□ -1
SNX1-209ENST00000559961 ZNF586Q9NXT0 402 aa8.83□□□□□ -1
SNX1-209ENST00000559961 IGSF23A1L1A6 192 aa8.82□□□□□ -1
SNX1-209ENST00000559961 RNASE4P34096 147 aaKnown RBP8.82□□□□□ -1
SNX1-209ENST00000559961 CSN1S1P47710 185 aa8.82□□□□□ -1
SNX1-209ENST00000559961 MORN5Q5VZ52 161 aa8.82□□□□□ -1
SNX1-209ENST00000559961 RXFP4Q8TDU9 374 aa8.82□□□□□ -1
SNX1-209ENST00000559961 PARD6GQ9BYG4 376 aaPredicted RBP8.82□□□□□ -1
SNX1-209ENST00000559961 Q9H8V8 135 aa8.82□□□□□ -1
SNX1-209ENST00000559961 A0A0J9YY99 117 aa8.81□□□□□ -1
SNX1-209ENST00000559961 C7orf71A4D174 169 aa8.81□□□□□ -1
SNX1-209ENST00000559961 RGS13O14921 159 aa8.81□□□□□ -1
SNX1-209ENST00000559961 DAZ2Q13117 558 aaKnown RBP8.81□□□□□ -1
SNX1-209ENST00000559961 EIF4E3Q8N5X7 224 aaKnown RBP8.81□□□□□ -1
SNX1-209ENST00000559961 OR5C1Q8NGR4 320 aa8.81□□□□□ -1
SNX1-209ENST00000559961 ZNRF2Q8NHG8 242 aa8.81□□□□□ -1
SNX1-209ENST00000559961 ARPC5LQ9BPX5 153 aa8.81□□□□□ -1
SNX1-209ENST00000559961 NPCDR1Q9BY65 106 aa8.81□□□□□ -1
SNX1-209ENST00000559961 H3BNG1 76 aa8.8□□□□□ -1
SNX1-209ENST00000559961 PRAF2O60831 178 aa8.8□□□□□ -1
SNX1-209ENST00000559961 NMBP08949 121 aa8.8□□□□□ -1
SNX1-209ENST00000559961 ASAH1Q13510 395 aa8.8□□□□□ -1
SNX1-209ENST00000559961 KIR3DS1Q14943 382 aa8.8□□□□□ -1
SNX1-209ENST00000559961 SCGB1C1Q8TD33 95 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms