RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 TM4SF20Q53R12 229 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 LCN12Q6JVE5 192 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 PRNTQ86SH4 94 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 NUDT10Q8NFP7 164 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 NUDT11Q96G61 164 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 CLEC5AQ9NY25 188 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 ZNF492Q9P255 531 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 SMPXQ9UHP9 88 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 TRAV8-2A0A0B4J237 113 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 CHEK1O14757 476 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 LY6G6DO95868 133 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 RNASE1P07998 156 aaKnown RBP9.67□□□□□ -0.86
USP3-213ENST00000559711 HLA-DMBP28068 263 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 CDX1P47902 265 aaPredicted RBP9.67□□□□□ -0.86
USP3-213ENST00000559711 RPEL1Q2QD12 228 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 IGFL4Q6B9Z1 124 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 C8orf86Q6ZUL3 223 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 ZFP82Q8N141 532 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 MRPL53Q96EL3 112 aaKnown RBP9.67□□□□□ -0.86
USP3-213ENST00000559711 SMR3AQ99954 134 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 RHPN1-AS1Q9BWJ2 59 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 UFC1Q9Y3C8 167 aa9.67□□□□□ -0.86
USP3-213ENST00000559711 SMIM27A0A1W2PRY6 76 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 C19orf71A6NCJ1 209 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 ZNF705GA8MUZ8 300 aaPredicted RBP9.66□□□□□ -0.86
USP3-213ENST00000559711 PHOX2AO14813 284 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 GATCO43716 136 aaKnown RBP9.66□□□□□ -0.86
USP3-213ENST00000559711 TRGC2P03986 189 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 SRD5A1P18405 259 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 PRR27Q6MZM9 219 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 LINC00322Q6ZN03 302 aaPredicted RBP9.66□□□□□ -0.86
USP3-213ENST00000559711 COX8CQ7Z4L0 72 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 REC114Q7Z4M0 266 aa9.66□□□□□ -0.86
USP3-213ENST00000559711 ZNF418Q8TF45 676 aaPredicted RBP9.66□□□□□ -0.86
USP3-213ENST00000559711 WIPF2Q8TF74 440 aaPredicted RBP9.66□□□□□ -0.86
USP3-213ENST00000559711 ZNF705FA8MVS1 300 aaPredicted RBP9.65□□□□□ -0.86
USP3-213ENST00000559711 LGALS9O00182 355 aa9.65□□□□□ -0.86
USP3-213ENST00000559711 TCTEX1D4Q5JR98 221 aa9.65□□□□□ -0.86
USP3-213ENST00000559711 MTORP42345 2549 aa9.65□□□□□ -0.87
USP3-213ENST00000559711 IGHV4OR15-8A0A075B7B6 117 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 A0A087WW49 117 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 IGKV2-40A0A087WW87 121 aaPredicted RBP9.64□□□□□ -0.87
USP3-213ENST00000559711 RBAKDNA6NC62 111 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 A8MWP6 167 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 IGKV2D-40P01614 121 aaPredicted RBP9.64□□□□□ -0.87
USP3-213ENST00000559711 HILS1P60008 231 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 CT83Q5H943 113 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 WFDC12Q8WWY7 111 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 C16orf95Q9H693 158 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 HIVEP2P31629 2446 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 TMEM213A2RRL7 107 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 NPIPB6E9PJ23 425 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 SOCS3O14543 225 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 PRB4P10163 310 aaPredicted RBP9.64□□□□□ -0.87
USP3-213ENST00000559711 SAPCD1Q5SSQ6 148 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 Q71RC1 249 aaPredicted RBP9.64□□□□□ -0.87
USP3-213ENST00000559711 RNF182Q8N6D2 247 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 ZC2HC1AQ96GY0 325 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 VGLL1Q99990 258 aa9.64□□□□□ -0.87
USP3-213ENST00000559711 PRAC2D3DTV9 90 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 P01737 135 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 HOXD3P31249 432 aaPredicted RBP9.63□□□□□ -0.87
USP3-213ENST00000559711 BMI1P35226 326 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 KLF5Q13887 457 aaPredicted RBP9.63□□□□□ -0.87
USP3-213ENST00000559711 GBGT1Q8N5D6 347 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 TSKUQ8WUA8 353 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 C4orf3Q8WVX3 66 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 DAZAP1Q96EP5 407 aaKnown RBP9.63□□□□□ -0.87
USP3-213ENST00000559711 C16orf92Q96LL3 132 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 PRR25Q96S07 402 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 RPP21Q9H633 154 aaKnown RBP9.63□□□□□ -0.87
USP3-213ENST00000559711 NRN1Q9NPD7 142 aa9.63□□□□□ -0.87
USP3-213ENST00000559711 NF1P21359 2839 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 CA1P00915 261 aaPredicted RBP9.62□□□□□ -0.87
USP3-213ENST00000559711 FOSL1P15407 271 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 CRIP1P50238 77 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 SYNJ2BPP57105 145 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 C18orf65Q6ZTR6 163 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 OR4B1Q8NGF8 309 aa9.62□□□□□ -0.87
USP3-213ENST00000559711 A8MWL6 223 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BKO60814 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BJP06899 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 EDN2P20800 178 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BOP23527 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BBP33778 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BDP58876 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BCP62807 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 RPL19P84098 196 aaKnown RBP9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST2H2BEQ16778 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 ACTL10Q5JWF8 245 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.61□□□□□ -0.87
USP3-213ENST00000559711 FRZBQ92765 325 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BHQ93079 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 C8orf49Q96NF6 230 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BNQ99877 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 HIST1H2BMQ99879 126 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 ASCL2Q99929 193 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 PPP1R14DQ9NXH3 145 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 FAM231BA6NCW3 169 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 IZUMO1RA6ND01 250 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms