RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 FAM213BQ8TBF2 198 aa15.93■□□□□ 0.14
SNX1-206ENST00000559389 SUN5Q8TC36 379 aa15.93■□□□□ 0.14
SNX1-206ENST00000559389 CLUHP3Q96NS8 147 aa15.93■□□□□ 0.14
SNX1-206ENST00000559389 TM2D3Q9BRN9 247 aa15.93■□□□□ 0.14
SNX1-206ENST00000559389 MAP1LC3B2A6NCE7 125 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 M0R3E3 92 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 LYPD1Q8N2G4 141 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 OR8A1Q8NGG7 326 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 MAP1LC3BQ9GZQ8 125 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 Q9H3A6 140 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 BOLA1Q9Y3E2 137 aa15.92■□□□□ 0.14
SNX1-206ENST00000559389 ZNF705FA8MVS1 300 aaPredicted RBP15.91■□□□□ 0.14
SNX1-206ENST00000559389 BOLA2-SMG1P6H3BVE0 249 aa15.91■□□□□ 0.14
SNX1-206ENST00000559389 UBE2CO00762 179 aa15.91■□□□□ 0.14
SNX1-206ENST00000559389 ICAM4Q14773 271 aa15.91■□□□□ 0.14
SNX1-206ENST00000559389 MORN3Q6PF18 240 aaPredicted RBP15.91■□□□□ 0.14
SNX1-206ENST00000559389 CSTL1Q9H114 145 aa15.91■□□□□ 0.14
SNX1-206ENST00000559389 TMEM167BQ9NRX6 74 aa15.91■□□□□ 0.14
SNX1-206ENST00000559389 PRAC2D3DTV9 90 aa15.9■□□□□ 0.14
SNX1-206ENST00000559389 DUSP14O95147 198 aaKnown RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 ZNF705DP0CH99 300 aaPredicted RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 ZNF705BP0CI00 300 aaPredicted RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 PRB4P10163 310 aaPredicted RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 SULT1A2P50226 295 aa15.9■□□□□ 0.14
SNX1-206ENST00000559389 RAB5CP51148 216 aa15.9■□□□□ 0.14
SNX1-206ENST00000559389 CNN1P51911 297 aaKnown RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 RANP62826 216 aaKnown RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 HIST1H1AQ02539 215 aaPredicted RBP15.9■□□□□ 0.14
SNX1-206ENST00000559389 AGRNO00468 2067 aa15.9■□□□□ 0.14
SNX1-206ENST00000559389 PRKDCP78527 4128 aaKnown RBP15.89■□□□□ 0.13
SNX1-206ENST00000559389 IGKV3-20P01619 116 aa15.89■□□□□ 0.13
SNX1-206ENST00000559389 NHLRC4P0CG21 123 aaPredicted RBP15.89■□□□□ 0.13
SNX1-206ENST00000559389 FGF8P55075 233 aaPredicted RBP15.89■□□□□ 0.13
SNX1-206ENST00000559389 OR4B1Q8NGF8 309 aa15.89■□□□□ 0.13
SNX1-206ENST00000559389 SPATA25Q9BR10 227 aa15.89■□□□□ 0.13
SNX1-206ENST00000559389 CA1P00915 261 aaPredicted RBP15.88■□□□□ 0.13
SNX1-206ENST00000559389 GIG44P09565 113 aaPredicted RBP15.88■□□□□ 0.13
SNX1-206ENST00000559389 AMTNQ6UX39 209 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 Q6ZWC4 215 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 IQCF2Q8IXL9 164 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 MBD3L1Q8WWY6 194 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 RETNQ9HD89 108 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 OTORQ9NRC9 128 aa15.88■□□□□ 0.13
SNX1-206ENST00000559389 NUTF2P61970 127 aaKnown RBP15.87■□□□□ 0.13
SNX1-206ENST00000559389 FAM74A1Q5RGS3 127 aa15.87■□□□□ 0.13
SNX1-206ENST00000559389 TMPRSS5Q9H3S3 457 aa15.87■□□□□ 0.13
SNX1-206ENST00000559389 NPIPB6E9PJ23 425 aa15.86■□□□□ 0.13
SNX1-206ENST00000559389 DEFB135Q30KP9 77 aa15.86■□□□□ 0.13
SNX1-206ENST00000559389 OR10J6PQ8NGY7 276 aa15.86■□□□□ 0.13
SNX1-206ENST00000559389 H2AFB1P0C5Y9 115 aa15.85■□□□□ 0.13
SNX1-206ENST00000559389 SFT2D1Q8WV19 159 aa15.85■□□□□ 0.13
SNX1-206ENST00000559389 SLC35B3Q9H1N7 401 aa15.85■□□□□ 0.13
SNX1-206ENST00000559389 ZMAT4Q9H898 229 aa15.85■□□□□ 0.13
SNX1-206ENST00000559389 TP53TG1Q9Y2A0 90 aa15.85■□□□□ 0.13
SNX1-206ENST00000559389 IGKV2-40A0A087WW87 121 aaPredicted RBP15.84■□□□□ 0.13
SNX1-206ENST00000559389 PGPA6NDG6 321 aa15.84■□□□□ 0.13
SNX1-206ENST00000559389 GGTLC3B5MD39 225 aa15.84■□□□□ 0.13
SNX1-206ENST00000559389 IGKV2D-40P01614 121 aaPredicted RBP15.84■□□□□ 0.13
SNX1-206ENST00000559389 CSN1S1P47710 185 aa15.84■□□□□ 0.13
SNX1-206ENST00000559389 ALKAL2Q6UX46 152 aa15.84■□□□□ 0.13
SNX1-206ENST00000559389 CMTM2Q8TAZ6 248 aa15.83■□□□□ 0.12
SNX1-206ENST00000559389 RXFP4Q8TDU9 374 aa15.83■□□□□ 0.12
SNX1-206ENST00000559389 C1QTNF4Q9BXJ3 329 aa15.83■□□□□ 0.12
SNX1-206ENST00000559389 YTHDF2Q9Y5A9 579 aaKnown RBP15.83■□□□□ 0.12
SNX1-206ENST00000559389 A0A1W2PRE2 83 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 FXYD7P58549 80 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 ARL6IP6Q8N6S5 226 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 C5orf17Q8NAS9 161 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 RNF183Q96D59 192 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 RCHY1Q96PM5 261 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 OVOL2Q9BRP0 275 aa15.82■□□□□ 0.12
SNX1-206ENST00000559389 TRAV1-1A0A0B4J248 108 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 A0A1B0GV50 99 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 RBAKDNA6NC62 111 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 DIRC3C9JPN6 131 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 SPRY2O43597 315 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 UBE2G2P60604 165 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 CSNK1G2-AS1Q8NCQ2 148 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 ODF3Q96PU9 254 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 XCL2Q9UBD3 114 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 ARL2-SNX15V9GYD0 113 aa15.81■□□□□ 0.12
SNX1-206ENST00000559389 FAM74A7A6NL05 159 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 AMBPP02760 352 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 SLC25A5P05141 298 aaKnown RBP15.8■□□□□ 0.12
SNX1-206ENST00000559389 GNG5P63218 68 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 ERCC8Q13216 396 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 SPINK13Q1W4C9 94 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 C9orf47Q6ZRZ4 202 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 RPH3ALQ9UNE2 315 aa15.8■□□□□ 0.12
SNX1-206ENST00000559389 ZNF705EA8MWA4 302 aaPredicted RBP15.79■□□□□ 0.12
SNX1-206ENST00000559389 M0R2Z0 102 aa15.79■□□□□ 0.12
SNX1-206ENST00000559389 VGLL1Q99990 258 aa15.79■□□□□ 0.12
SNX1-206ENST00000559389 AGPAT4-IT1Q9H0P7 198 aa15.79■□□□□ 0.12
SNX1-206ENST00000559389 PPP1R14DQ9NXH3 145 aa15.79■□□□□ 0.12
SNX1-206ENST00000559389 U3KQK5 164 aa15.79■□□□□ 0.12
SNX1-206ENST00000559389 HBE1P02100 147 aa15.78■□□□□ 0.12
SNX1-206ENST00000559389 CT45A10P0DMU9 189 aa15.78■□□□□ 0.12
SNX1-206ENST00000559389 SUMO1P63165 101 aaKnown RBP15.78■□□□□ 0.12
SNX1-206ENST00000559389 LINC00477Q96M19 166 aa15.78■□□□□ 0.12
SNX1-206ENST00000559389 CRXO43186 299 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms