RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MLST8Q9BVC4 326 aa13□□□□□ -0.33
LDLR-206ENST00000557958 IGHV3OR16-8A0A075B7F1 116 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 XKRY2A2RUG3 117 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 ZNF785A8K8V0 405 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 DIRC3C9JPN6 131 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 NDUFA4O00483 81 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 DDTP30046 118 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 CFHR3Q02985 330 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 GRAMD2BQ96HH9 432 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 C14orf144Q96I85 54 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 PRSS22Q9GZN4 317 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 NPFFR1Q9GZQ6 430 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 ZNF492Q9P255 531 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 TRAPPC1Q9Y5R8 145 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 SMIM27A0A1W2PRY6 76 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 PSG3Q16557 428 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 Q6ZS46 218 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 SGK494Q96LW2 274 aa12.99□□□□□ -0.33
LDLR-206ENST00000557958 ACANP16112 2415 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 CLPSL1A2RUU4 121 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 PRNTQ86SH4 94 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 NUDT10Q8NFP7 164 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 NUDT11Q96G61 164 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 SLC50A1Q9BRV3 221 aa12.98□□□□□ -0.33
LDLR-206ENST00000557958 P01737 135 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 IGHG4P01861 327 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 CT83Q5H943 113 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 WDR73Q6P4I2 378 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 OR4X2Q8NGF9 303 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 IGLV2-11P01706 119 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 GZMBP10144 247 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 SLC35B1P78383 322 aa12.97□□□□□ -0.33
LDLR-206ENST00000557958 TRAV8-1A0A0A6YYK1 113 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 MT-ND6P03923 174 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 SRD5A1P18405 259 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 GBGT1Q8N5D6 347 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 TSKUQ8WUA8 353 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 KLK15Q9H2R5 256 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 RPP21Q9H633 154 aaKnown RBP12.96□□□□□ -0.33
LDLR-206ENST00000557958 ZNF331Q9NQX6 463 aaPredicted RBP12.96□□□□□ -0.33
LDLR-206ENST00000557958 NAT8BQ9UHF3 227 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 PSG8Q9UQ74 426 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 SMAD5-AS1Q9Y6J3 95 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 U3KQE9 123 aa12.96□□□□□ -0.33
LDLR-206ENST00000557958 IZUMO1RA6ND01 250 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 A8MWL6 223 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 M0R3E3 92 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 OR4B1Q8NGF8 309 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 TMEM18Q96B42 140 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 CLEC5AQ9NY25 188 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 TLN2Q9Y4G6 2542 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 OTOGQ6ZRI0 2925 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 A0A1W2PS18 150 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 IGHV3-11P01762 117 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 CT45A10P0DMU9 189 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 PSMB8P28062 276 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 TCL1AP56279 114 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 LBHQ53QV2 105 aaPredicted RBP12.95□□□□□ -0.34
LDLR-206ENST00000557958 RASL11AQ6T310 242 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 GNB1LQ9BYB4 327 aa12.95□□□□□ -0.34
LDLR-206ENST00000557958 C19orf71A6NCJ1 209 aa12.94□□□□□ -0.34
LDLR-206ENST00000557958 SAPCD1Q5SSQ6 148 aa12.94□□□□□ -0.34
LDLR-206ENST00000557958 FLNBO75369 2602 aaKnown RBP12.93□□□□□ -0.34
LDLR-206ENST00000557958 INAFM1C9JVW0 142 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 TMEM95Q3KNT9 176 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 PEF1Q9UBV8 284 aaKnown RBP12.93□□□□□ -0.34
LDLR-206ENST00000557958 CYSRT1A8MQ03 144 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 CHEK1O14757 476 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 ZNF207O43670 478 aaKnown RBP12.93□□□□□ -0.34
LDLR-206ENST00000557958 SSTP61278 116 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 TMEM86BQ8N661 226 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 GFRA4Q9GZZ7 299 aa12.93□□□□□ -0.34
LDLR-206ENST00000557958 SONP18583 2426 aaKnown RBP12.92□□□□□ -0.34
LDLR-206ENST00000557958 BAHCC1Q9P281 2608 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 IGHV3-66A0A0C4DH42 116 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 FAM231BA6NCW3 169 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 DNAJC9-AS1A6NH13 148 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 CA1P00915 261 aaPredicted RBP12.92□□□□□ -0.34
LDLR-206ENST00000557958 TRBV12-3P01733 135 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 SCGB2A2Q13296 93 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 FAM106AQ4KMX7 169 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 C16orf54Q6UWD8 224 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 MRPL53Q96EL3 112 aaKnown RBP12.92□□□□□ -0.34
LDLR-206ENST00000557958 PRO1933Q9H354 126 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 TMEM160Q9NX00 188 aa12.92□□□□□ -0.34
LDLR-206ENST00000557958 SNURFLB1AK76 121 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 HLA-DQA1P01909 254 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 ELANEP08246 267 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 FOSL1P15407 271 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 CBLN1P23435 193 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 FOXE3Q13461 319 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 ATP5L2Q7Z4Y8 100 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 NEU1Q99519 415 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 NDFIP1Q9BT67 221 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 IGHV3OR16-13A0A075B7E8 117 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 IGHV3-74A0A0B4J1X5 117 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 RBAKDNA6NC62 111 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 A8MWP6 167 aa12.91□□□□□ -0.34
LDLR-206ENST00000557958 NPIPB6E9PJ23 425 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms