RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TIMM8BQ9Y5J9 83 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-232ENST00000557487 ICE1Q9Y2F5 2266 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 PPIAL4CA0A0B4J2A2 164 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 A1L4Q6 167 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 E7EQL1 145 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 SH2D1AO60880 128 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 PRB1P04280 392 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 PPIAL4GP0DN37 164 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 FCGR2BP31994 310 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-232ENST00000557487 MFAP4P55083 255 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 NPBQ8NG41 125 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 TPPP3Q9BW30 176 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 SVILO95425 2214 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 NPIPB5A8MRT5 1133 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 NBR2O15453 112 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 GNG7O60262 68 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 RPL7P18124 248 aaKnown RBP12.79□□□□□ -0.36
SHMT2-232ENST00000557487 CEACAM3P40198 252 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 PAX8Q06710 450 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 KLRB1Q12918 225 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 IGFBPL1Q8WX77 278 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 RABAC1Q9UI14 185 aa12.79□□□□□ -0.36
SHMT2-232ENST00000557487 IGSF10Q6WRI0 2623 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 LINC01546A6NGU7 62 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 NDUFA3O95167 84 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 MRPL51Q4U2R6 128 aaKnown RBP12.78□□□□□ -0.36
SHMT2-232ENST00000557487 UFSP1Q6NVU6 142 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 Q71RC1 249 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-232ENST00000557487 IFI27L1Q96BM0 104 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 C8orf49Q96NF6 230 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 CHD6Q8TD26 2715 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 ZFYVE26Q68DK2 2539 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 COX7A1P24310 79 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 ERASQ7Z444 233 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 AMN1Q8IY45 258 aa12.78□□□□□ -0.36
SHMT2-232ENST00000557487 M0R3E3 92 aa12.77□□□□□ -0.37
SHMT2-232ENST00000557487 NBEAQ8NFP9 2946 aa12.77□□□□□ -0.37
SHMT2-232ENST00000557487 LOC389332A0A1B0GUA5 103 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 TMEM213A2RRL7 107 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 TIMM23O14925 209 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 CKS2P33552 79 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 CACNG7P62955 275 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 PIP4P2Q8N4L2 257 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 FER1L6-AS1Q8NA97 138 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 PRR25Q96S07 402 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 DPM3Q9P2X0 92 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 ARFGEF3Q5TH69 2177 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 PLXNB1O43157 2135 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 IGLV11-55A0A075B6I3 123 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 FAM106CPP0CH98 169 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 FAM106AQ4KMX7 169 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 GFRALQ6UXV0 394 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 LY6G5BQ8NDX9 201 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 OR11H6Q8NGC7 330 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 CNFNQ9BYD5 112 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 THYN1Q9P016 225 aa12.76□□□□□ -0.37
SHMT2-232ENST00000557487 K7EP34 96 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 IGLC6P0CF74 106 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 LOXL1Q08397 574 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-232ENST00000557487 ADAMTSL5Q6ZMM2 481 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 OR5A1Q8NGJ0 315 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 MAP1LC3AQ9H492 121 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 MALRD1Q5VYJ5 2156 aa12.75□□□□□ -0.37
SHMT2-232ENST00000557487 CD3EP07766 207 aa12.74□□□□□ -0.37
SHMT2-232ENST00000557487 TTC9CQ8N5M4 171 aa12.74□□□□□ -0.37
SHMT2-232ENST00000557487 CFHR4Q92496 578 aa12.74□□□□□ -0.37
SHMT2-232ENST00000557487 NXT2Q9NPJ8 142 aaKnown RBP12.74□□□□□ -0.37
SHMT2-232ENST00000557487 HIGD1BQ9P298 99 aa12.74□□□□□ -0.37
SHMT2-232ENST00000557487 ATMQ13315 3056 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 SNAI2O43623 268 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 NDUFS7O75251 213 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 KIR3DS1Q14943 382 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 TWIST1Q15672 202 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 C5orf64Q2M2E5 130 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 Q8NA96 180 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 FANCD2OSQ96PS1 177 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 C21orf62Q9NYP8 219 aa12.73□□□□□ -0.37
SHMT2-232ENST00000557487 A0A0G2JLM5 398 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 NPYP01303 97 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 ZNF562Q6V9R5 426 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 OR2K2Q8NGT1 345 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 SMPXQ9UHP9 88 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 COL6A6A6NMZ7 2263 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 ATRXP46100 2492 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 EGR2P11161 476 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-232ENST00000557487 HLA-DRB4P13762 266 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 RAB9AP51151 201 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 CSTL1Q9H114 145 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 ONECUT1Q9UBC0 465 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 HLA-DRB4X5D2U9 266 aa12.72□□□□□ -0.37
SHMT2-232ENST00000557487 TMSB15BA0A087X1C1 80 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 M0R1W7 72 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 FCER1GP30273 86 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 DLX1P56177 255 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 ASCL2Q99929 193 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 ZMAT4Q9H898 229 aa12.71□□□□□ -0.37
SHMT2-232ENST00000557487 UQCRFS1P47985 274 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 ARPC1AQ92747 370 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 PIEZO2Q9H5I5 2752 aa12.7□□□□□ -0.38
SHMT2-232ENST00000557487 IGKV2-40A0A087WW87 121 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms