RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 ANKRD39Q53RE8 183 aa3.96□□□□□ -1.77
SYNE2-223ENST00000557005 CCL19Q99731 98 aa3.96□□□□□ -1.77
SYNE2-223ENST00000557005 TMEM14CQ9P0S9 112 aa3.96□□□□□ -1.77
SYNE2-223ENST00000557005 LRP4O75096 1905 aa3.96□□□□□ -1.77
SYNE2-223ENST00000557005 EFNA4P52798 201 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 C9JAW5 83 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 SIVA1O15304 175 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 IGLV2-8P01709 118 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 BRWD1-AS2P59051 145 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 SH2D6Q7Z4S9 175 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 C11orf68Q9H3H3 251 aaKnown RBP3.96□□□□□ -1.78
SYNE2-223ENST00000557005 IGLV2-23P01705 113 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 IGLC1P0CG04 106 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 GP9P14770 177 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 RBX1P62877 108 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 EIF4EBP1Q13541 118 aaPredicted RBP3.96□□□□□ -1.78
SYNE2-223ENST00000557005 DTX2Q86UW9 622 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 LINC00477Q96M19 166 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 MRPL35Q9NZE8 188 aaKnown RBP3.96□□□□□ -1.78
SYNE2-223ENST00000557005 ATG2AQ2TAZ0 1938 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 E7EUB6 86 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 M0R2P5 195 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 CTRLP40313 264 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 CIRBPQ14011 172 aaKnown RBP3.96□□□□□ -1.78
SYNE2-223ENST00000557005 LINC01545Q5VT33 79 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 LYPD1Q8N2G4 141 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 TP53TG1Q9Y2A0 90 aa3.96□□□□□ -1.78
SYNE2-223ENST00000557005 DOCK9Q9BZ29 2069 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 A0A0U1RRA0 63 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 SNRNP200O75643 2136 aaKnown RBP3.95□□□□□ -1.78
SYNE2-223ENST00000557005 ZNF688P0C7X2 276 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 NEU4Q8WWR8 484 aaPredicted RBP3.95□□□□□ -1.78
SYNE2-223ENST00000557005 DDB2Q92466 427 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 HEATR5AQ86XA9 2040 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 LY6HO94772 140 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 EGR2P11161 476 aaPredicted RBP3.95□□□□□ -1.78
SYNE2-223ENST00000557005 SUMO2P61956 95 aaKnown RBP3.95□□□□□ -1.78
SYNE2-223ENST00000557005 SNRPD3P62318 126 aaKnown RBP3.95□□□□□ -1.78
SYNE2-223ENST00000557005 ABHD17AQ96GS6 310 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 FAM167A-AS1Q96KT0 104 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 DPH3P1Q9H4G8 78 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 ADAMTS9Q9P2N4 1935 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 TMEM262E9PQX1 116 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 P0C879 139 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 PAX8Q06710 450 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 C2orf82Q6UX34 121 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 C1QTNF4Q9BXJ3 329 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 NCOR1P1Q9H4R4 102 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 TEX48A0A1B0GUV7 120 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 LINC01549A6NIU2 74 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 IGLL5B9A064 214 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 C22orf46C9J442 243 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 TTTY13Q9BZ97 58 aa3.95□□□□□ -1.78
SYNE2-223ENST00000557005 IGKV1OR2-108A0A075B7D4 117 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 A0A087WX48 190 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 IGHG3P01860 377 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 THBDP07204 575 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 FXYD2P54710 66 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 LOXL1Q08397 574 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 GAGE2BQ13066 116 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 GAGE2EQ4V326 116 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 PRSS33Q8NF86 280 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 OR13C6PQ8NH95 151 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 GAGE2DQ9UEU5 116 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 SRCAPQ6ZRS2 3230 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 TRAV8-3A0A0A6YYJ7 113 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 ZNF883P0CG24 379 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 PSMG4Q5JS54 123 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 LINC00322Q6ZN03 302 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 DYNAPQ8N1N2 210 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 ZNF48Q96MX3 618 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 H3BMM0 161 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 SPTBP11277 2137 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 ETDBQ3ZM63 59 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 RUSC1-AS1Q66K80 236 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 TNFRSF14Q92956 283 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 RNASE6Q93091 150 aaKnown RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 UBE2WQ96B02 151 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 COL5A1P20908 1838 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 C2orf70A6NJV1 201 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 OVOL1O14753 267 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 Q8N976 141 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 SPXQ9BT56 116 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 TRAV41A0A0B4J266 112 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 MBD3L4A6NDZ8 208 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 MBD3L3A6NE82 208 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 MBD3L5A6NJ08 208 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 E7EQL1 145 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 LHBP01229 141 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 IGLV1-44P01699 117 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 C5orf64Q2M2E5 130 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 MBD3L2Q8NHZ7 208 aaPredicted RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 PRR25Q96S07 402 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 LINC01587Q99440 93 aa3.94□□□□□ -1.78
SYNE2-223ENST00000557005 MRPL36Q9P0J6 103 aaKnown RBP3.94□□□□□ -1.78
SYNE2-223ENST00000557005 ZNF672Q499Z4 452 aaPredicted RBP3.93□□□□□ -1.78
SYNE2-223ENST00000557005 COPS9Q8WXC6 57 aa3.93□□□□□ -1.78
SYNE2-223ENST00000557005 YAE1D1Q9NRH1 226 aa3.93□□□□□ -1.78
SYNE2-223ENST00000557005 KLK9Q9UKQ9 250 aa3.93□□□□□ -1.78
SYNE2-223ENST00000557005 GATA4P43694 442 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms