RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 EXOC3-AS1Q8N2X6 119 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 RAB24Q969Q5 203 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 CLEC5AQ9NY25 188 aa12.79□□□□□ -0.36
SHMT2-225ENST00000556798 M0R3E3 92 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 SPRY2O43597 315 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 ARL14EPLP0DKL9 152 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 PSG9Q00887 426 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 AKR1C8PQ5T2L2 129 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 OR8A1Q8NGG7 326 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 RNF183Q96D59 192 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 HYLS1Q96M11 299 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 ACTR3CQ9C0K3 210 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-225ENST00000556798 SLC35B3Q9H1N7 401 aa12.78□□□□□ -0.36
SHMT2-225ENST00000556798 STAG3L2P0CL84 134 aa12.77□□□□□ -0.37
SHMT2-225ENST00000556798 STAG3L3P0CL85 134 aa12.77□□□□□ -0.37
SHMT2-225ENST00000556798 ZFP69Q49AA0 526 aa12.77□□□□□ -0.37
SHMT2-225ENST00000556798 PQLC2Q6ZP29 291 aa12.77□□□□□ -0.37
SHMT2-225ENST00000556798 XCL2Q9UBD3 114 aa12.77□□□□□ -0.37
SHMT2-225ENST00000556798 DUSP14O95147 198 aaKnown RBP12.76□□□□□ -0.37
SHMT2-225ENST00000556798 NUTF2P61970 127 aaKnown RBP12.76□□□□□ -0.37
SHMT2-225ENST00000556798 ICAM4Q14773 271 aa12.76□□□□□ -0.37
SHMT2-225ENST00000556798 ZNF726P1Q15940 193 aa12.76□□□□□ -0.37
SHMT2-225ENST00000556798 AAMDCQ9H7C9 122 aa12.76□□□□□ -0.37
SHMT2-225ENST00000556798 TP53TG1Q9Y2A0 90 aa12.76□□□□□ -0.37
SHMT2-225ENST00000556798 A8MTW9 85 aa12.75□□□□□ -0.37
SHMT2-225ENST00000556798 RANP62826 216 aaKnown RBP12.75□□□□□ -0.37
SHMT2-225ENST00000556798 AMTNQ6UX39 209 aa12.75□□□□□ -0.37
SHMT2-225ENST00000556798 CLUHP3Q96NS8 147 aa12.75□□□□□ -0.37
SHMT2-225ENST00000556798 PLA2G2EQ9NZK7 142 aa12.75□□□□□ -0.37
SHMT2-225ENST00000556798 CTXND1A0A1B0GTU2 59 aa12.74□□□□□ -0.37
SHMT2-225ENST00000556798 TPT1P13693 172 aaKnown RBP12.74□□□□□ -0.37
SHMT2-225ENST00000556798 BAP18Q8IXM2 172 aa12.74□□□□□ -0.37
SHMT2-225ENST00000556798 C9orf62Q8N4C0 152 aa12.74□□□□□ -0.37
SHMT2-225ENST00000556798 TMED6Q8WW62 240 aa12.74□□□□□ -0.37
SHMT2-225ENST00000556798 MRPL53Q96EL3 112 aaKnown RBP12.74□□□□□ -0.37
SHMT2-225ENST00000556798 Q9H3A6 140 aa12.74□□□□□ -0.37
SHMT2-225ENST00000556798 M0R2Z0 102 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 SEC11BP0C7V7 166 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 GCHFRP30047 84 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 FHITP49789 147 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 EIF5AP63241 154 aaKnown RBP12.73□□□□□ -0.37
SHMT2-225ENST00000556798 SPINK13Q1W4C9 94 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 IQCF2Q8IXL9 164 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 CSNK1G2-AS1Q8NCQ2 148 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 OR10J6PQ8NGY7 276 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 OR11H2Q8NH07 326 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 STOML3Q8TAV4 291 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 C1QTNF4Q9BXJ3 329 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 PRELID1Q9Y255 219 aa12.73□□□□□ -0.37
SHMT2-225ENST00000556798 IGKV2-40A0A087WW87 121 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-225ENST00000556798 BOLA2-SMG1P6H3BVE0 249 aa12.72□□□□□ -0.37
SHMT2-225ENST00000556798 CXorf1O96002 111 aa12.72□□□□□ -0.37
SHMT2-225ENST00000556798 IGKV2D-40P01614 121 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-225ENST00000556798 NKX2-5P52952 324 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-225ENST00000556798 FGF8P55075 233 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-225ENST00000556798 RARRES2Q99969 163 aa12.72□□□□□ -0.37
SHMT2-225ENST00000556798 EDA2RQ9HAV5 297 aa12.72□□□□□ -0.37
SHMT2-225ENST00000556798 PPP1R14DQ9NXH3 145 aa12.72□□□□□ -0.37
SHMT2-225ENST00000556798 ERCC8Q13216 396 aa12.71□□□□□ -0.37
SHMT2-225ENST00000556798 WWC2-AS2Q96NR7 200 aa12.71□□□□□ -0.37
SHMT2-225ENST00000556798 TRAV12-2A0A075B6T6 113 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 MAP1LC3B2A6NCE7 125 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 NPIPB6E9PJ23 425 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 LYPD1Q8N2G4 141 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 FAM213BQ8TBF2 198 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 MAP1LC3BQ9GZQ8 125 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 TMPRSS5Q9H3S3 457 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 OTORQ9NRC9 128 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 RPH3ALQ9UNE2 315 aa12.7□□□□□ -0.38
SHMT2-225ENST00000556798 IGHV3OR16-12A0A075B7B8 117 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 A0A0J9YWU9 116 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 PGPA6NDG6 321 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 CT45A10P0DMU9 189 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 SLC51BQ86UW2 128 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 SUN5Q8TC36 379 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 TMEM167BQ9NRX6 74 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 X6R8D5 127 aa12.69□□□□□ -0.38
SHMT2-225ENST00000556798 ZNF705EA8MWA4 302 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-225ENST00000556798 UMAD1C9J7I0 102 aa12.68□□□□□ -0.38
SHMT2-225ENST00000556798 DEFB4AO15263 64 aa12.68□□□□□ -0.38
SHMT2-225ENST00000556798 CRXO43186 299 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-225ENST00000556798 CSN1S1P47710 185 aa12.68□□□□□ -0.38
SHMT2-225ENST00000556798 KIR3DS1Q14943 382 aa12.68□□□□□ -0.38
SHMT2-225ENST00000556798 VGLL1Q99990 258 aa12.68□□□□□ -0.38
SHMT2-225ENST00000556798 A0A1B0GV50 99 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 J3KRW8 73 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 INSP01308 110 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 GNG5P63218 68 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 C1orf158Q8N1D5 194 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 CMTM2Q8TAZ6 248 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 IGF2BP2-AS1Q96M15 143 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 AGPAT4-IT1Q9H0P7 198 aa12.67□□□□□ -0.38
SHMT2-225ENST00000556798 IGHV4-28A0A0C4DH34 117 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 DIRC3C9JPN6 131 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 AMBPP02760 352 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 RBMY1A1P0DJD3 496 aaKnown RBP12.66□□□□□ -0.38
SHMT2-225ENST00000556798 RBMY1CP0DJD4 496 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 CDKN1BP46527 198 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 UBE2G2P60604 165 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 RBMY1FQ15415 496 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms