RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SLC35B3Q9H1N7 401 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 A0A1B0GVG6 124 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 PRAC2D3DTV9 90 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 M0R3E3 92 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 BCL2L11O43521 198 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 GIG44P09565 113 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 RANP62826 216 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 ICAM4Q14773 271 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 PQLC2Q6ZP29 291 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 TMUB2Q71RG4 321 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 RPP25LQ8N5L8 163 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 RAB24Q969Q5 203 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 ZNF503Q96F45 646 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 CLUHP3Q96NS8 147 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 PRELID1Q9Y255 219 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 DNAH9Q9NYC9 4486 aa8.36□□□□□ -1.07
CCDC88C-212ENST00000556767 IGHV3OR16-12A0A075B7B8 117 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 C1QBP02746 253 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 EIF5AP63241 154 aaKnown RBP8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 SPINK13Q1W4C9 94 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 IQCF2Q8IXL9 164 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 PHYHIPLQ96FC7 376 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 EDA2RQ9HAV5 297 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 TGP01266 2768 aa8.35□□□□□ -1.07
CCDC88C-212ENST00000556767 A0A0J9YWU9 116 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 BOLA2-SMG1P6H3BVE0 249 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 M0R2Z0 102 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 ARL14EPLP0DKL9 152 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 CSN1S1P47710 185 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 AMTNQ6UX39 209 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 MRPL53Q96EL3 112 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 HYLS1Q96M11 299 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 Q9H3A6 140 aa8.34□□□□□ -1.07
CCDC88C-212ENST00000556767 DEFB4AO15263 64 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 CXorf1O96002 111 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 AMBPP02760 352 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 STAG3L2P0CL84 134 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 STAG3L3P0CL85 134 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 TPT1P13693 172 aaKnown RBP8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 CD300CQ08708 224 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 LGALSLQ3ZCW2 172 aaPredicted RBP8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 CSNK1G2-AS1Q8NCQ2 148 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 TMEM208Q9BTX3 173 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 RPH3ALQ9UNE2 315 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 GOLT1BQ9Y3E0 138 aa8.33□□□□□ -1.08
CCDC88C-212ENST00000556767 TRAV12-2A0A075B6T6 113 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 CTXND1A0A1B0GTU2 59 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 A8MTW9 85 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 J3KRW8 73 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 INSP01308 110 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 SEC11BP0C7V7 166 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 GCHFRP30047 84 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 ERCC8Q13216 396 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 ZFP69Q49AA0 526 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 FAM74A1Q5RGS3 127 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 SSX7Q7RTT5 188 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 BAP18Q8IXM2 172 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 LYPD1Q8N2G4 141 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 CMTM2Q8TAZ6 248 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 IGF2BP2-AS1Q96M15 143 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 OTORQ9NRC9 128 aa8.32□□□□□ -1.08
CCDC88C-212ENST00000556767 IGKV2-40A0A087WW87 121 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 IGHV4-28A0A0C4DH34 117 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 PGPA6NDG6 321 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 ZNF705EA8MWA4 302 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 NPIPB6E9PJ23 425 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 IGKV2D-40P01614 121 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 MIFP14174 115 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 TSPOP30536 169 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 CDKN1BP46527 198 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 FGF8P55075 233 aaPredicted RBP8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 ZNF726P1Q15940 193 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 MUC7Q8TAX7 377 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 RXFP4Q8TDU9 374 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 TMED6Q8WW62 240 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 TMEM167BQ9NRX6 74 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 X6R8D5 127 aa8.31□□□□□ -1.08
CCDC88C-212ENST00000556767 MAP1LC3B2A6NCE7 125 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 SLC25A5P05141 298 aaKnown RBP8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 CT45A10P0DMU9 189 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 LEPP41159 167 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 TMEM78Q5T7P6 136 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 ZFAND6Q6FIF0 208 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 C1orf158Q8N1D5 194 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 IL17DQ8TAD2 202 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 STOML3Q8TAV4 291 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 FAM213BQ8TBF2 198 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 LINC00477Q96M19 166 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 MAP1LC3BQ9GZQ8 125 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 AGPAT4-IT1Q9H0P7 198 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 TMPRSS5Q9H3S3 457 aa8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 HUWE1Q7Z6Z7 4374 aaKnown RBP8.3□□□□□ -1.08
CCDC88C-212ENST00000556767 UMAD1C9J7I0 102 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 CRXO43186 299 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 HBE1P02100 147 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 FHITP49789 147 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 EMP1P54849 157 aa8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 EIF5AL1Q6IS14 154 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 ZNF705AQ6ZN79 300 aaPredicted RBP8.29□□□□□ -1.08
CCDC88C-212ENST00000556767 Q8NAQ8 132 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms