RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 FKBP11Q9NYL4 201 aa0.69□□□□□ -2.3
SCFD1-217ENST00000555953 MED31Q9Y3C7 131 aa0.69□□□□□ -2.3
SCFD1-217ENST00000555953 YTHDC2Q9H6S0 1430 aaKnown RBP0.69□□□□□ -2.3
SCFD1-217ENST00000555953 ANKRD31Q8N7Z5 1873 aa0.69□□□□□ -2.3
SCFD1-217ENST00000555953 PTPRFP10586 1907 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 MYO18AQ92614 2054 aaKnown RBP0.68□□□□□ -2.3
SCFD1-217ENST00000555953 CCL25O15444 150 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 ARPC5O15511 151 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 NUPR1O60356 82 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 DNAL4O96015 105 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 IFNA4P05014 189 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 OR10J4P0C629 311 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 S100GP29377 79 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 CDK6Q00534 326 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 KLRD1Q13241 179 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 SAMD13Q5VXD3 122 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 LINC00322Q6ZN03 302 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-217ENST00000555953 OR5AS1Q8N127 324 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 PLPP5Q8NEB5 264 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 ZNF431Q8TF32 576 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-217ENST00000555953 AMELYQ99218 206 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 CACYBPQ9HB71 228 aaKnown RBP0.68□□□□□ -2.3
SCFD1-217ENST00000555953 NUBP2Q9Y5Y2 271 aa0.68□□□□□ -2.3
SCFD1-217ENST00000555953 UNC13CQ8NB66 2214 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 IGHV1-58A0A0C4DH39 117 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 LOC107984640A0A0U1RRK4 108 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 M0R233 179 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 HIST1H2BKO60814 126 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 KLF7O75840 302 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-217ENST00000555953 CST7O76096 145 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 MT-ND4LP03901 98 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 MT-ND6P03923 174 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 HIST1H2BJP06899 126 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 CXCL8P10145 99 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 BCL2P10415 239 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 SDC4P31431 198 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 RAB5CP51148 216 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 FOXA3P55318 350 aaPredicted RBP0.67□□□□□ -2.3
SCFD1-217ENST00000555953 ZCCHC23Q6ZST2 131 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 CCDC32Q9BV29 185 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 OR2H1Q9GZK4 316 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 CBLN4Q9NTU7 201 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 TMEM14CQ9P0S9 112 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 GINS2Q9Y248 185 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 RFX7Q2KHR2 1363 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 CHD3Q12873 2000 aaKnown RBP0.67□□□□□ -2.3
SCFD1-217ENST00000555953 MGAMO43451 1857 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 UNC13AQ9UPW8 1703 aa0.67□□□□□ -2.3
SCFD1-217ENST00000555953 BCL9O00512 1426 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 FAM135BQ49AJ0 1406 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 IGLV3-32A0A0A0MS00 114 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 COX7CP15954 63 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 SDC2P34741 201 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 PSG9Q00887 426 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 PRB3Q04118 309 aaPredicted RBP0.66□□□□□ -2.3
SCFD1-217ENST00000555953 OR8B8Q15620 311 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 HAGHLQ6PII5 290 aaPredicted RBP0.66□□□□□ -2.3
SCFD1-217ENST00000555953 ARPINQ7Z6K5 226 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 BRK1Q8WUW1 75 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 PSMF1Q92530 271 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 DIRC1Q969H9 104 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 HYLS1Q96M11 299 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 LIMD2Q9BT23 127 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 EML5Q05BV3 1969 aa0.66□□□□□ -2.3
SCFD1-217ENST00000555953 SNRNP200O75643 2136 aaKnown RBP0.65□□□□□ -2.3
SCFD1-217ENST00000555953 TRAV27A0A087WT01 109 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 OR2T8A6NH00 312 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 F8W1H4 67 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 H3BQV1 296 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 KPNA4O00629 521 aaPredicted RBP0.65□□□□□ -2.31
SCFD1-217ENST00000555953 RPL35P42766 123 aaKnown RBP0.65□□□□□ -2.31
SCFD1-217ENST00000555953 LINC00305Q7Z4B0 112 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 TEN1Q86WV5 123 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 LINC00269Q8N2A0 174 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 FAM216BQ8N7L0 139 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.65□□□□□ -2.31
SCFD1-217ENST00000555953 CLEC2BQ92478 149 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 JPT1Q9UK76 154 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 RTL9Q8NET4 1388 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 FREM3P0C091 2139 aa0.65□□□□□ -2.31
SCFD1-217ENST00000555953 ASCC3Q8N3C0 2202 aaKnown RBP0.65□□□□□ -2.31
SCFD1-217ENST00000555953 ERBINQ96RT1 1412 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 KIAA1107Q9UPP5 1409 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TRAPPC8Q9Y2L5 1435 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 hDV103S1A0JD37 113 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 E7EQ34 232 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TSTD3H0UI37 97 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 H3BRM9 83 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 NCR3O14931 201 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 CRYGSP22914 178 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 MIR22HGQ0VDD5 57 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 ALX1Q15699 326 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 VMA21Q3ZAQ7 101 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TOMM20LQ6UXN7 152 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 CROCCP2Q86T23 111 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 LRRC18Q8N456 261 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TMEM229BQ8NBD8 167 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TMEM35BQ8NCS4 154 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 OR5H6Q8NGV6 325 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 CCL4L1Q8NHW4 92 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms