RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 VPS13DQ5THJ4 4388 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 TRAV5A0A0B4J249 113 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 LYRM9A8MSI8 78 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 NPIPB6E9PJ23 425 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 HIST1H1EP10412 219 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 EMP1P54849 157 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 TAS2R60P59551 318 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 RHOBP62745 196 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 ZNF767PQ75MW2 155 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 OR10J6PQ8NGY7 276 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 PRELID1Q9Y255 219 aa11.42□□□□□ -0.58
CCDC88C-209ENST00000554872 PTTG1O95997 202 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 RPP25LQ8N5L8 163 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 THAP6Q8TBB0 222 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 ATP5SQ99766 215 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 NDUFAF3Q9BU61 184 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 MRPL32Q9BYC8 188 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 PARD6GQ9BYG4 376 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 PPP1R14DQ9NXH3 145 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 HSPB11Q9Y547 144 aa11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 EPPK1P58107 5090 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-209ENST00000554872 TRAV12-2A0A075B6T6 113 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 PLAC8L1A1L4L8 177 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 H7BYZ3 331 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 NDUFB4O95168 129 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 CLINT1Q14677 625 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 ZNF493Q6ZR52 646 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 FAM167A-AS1Q96KT0 104 aa11.4□□□□□ -0.58
CCDC88C-209ENST00000554872 PRAC2D3DTV9 90 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 C17orf112F2Z3M2 114 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 H3BTX0 84 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 GCSAMLQ5JQS6 135 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 C16orf74Q96GX8 76 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 SLC25A2Q9BXI2 301 aa11.39□□□□□ -0.59
CCDC88C-209ENST00000554872 ZNF705GA8MUZ8 300 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 SNRPCP09234 159 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 P0DMU3 169 aa11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 FAM231AP0DMU4 169 aa11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 FAM231CP0DMU5 169 aa11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 DAD1P61803 113 aa11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 RNASE8Q8TDE3 154 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 TMEM263Q8WUH6 116 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-209ENST00000554872 PYYP10082 97 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 RPL12P30050 165 aaKnown RBP11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 LEPP41159 167 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 GFI1BQ5VTD9 330 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 LINC01587Q99440 93 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 MBD2Q9UBB5 411 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 FUT9Q9Y231 359 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 DNAH6Q9C0G6 4158 aa11.37□□□□□ -0.59
CCDC88C-209ENST00000554872 NMBP08949 121 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 CT45A10P0DMU9 189 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 AZU1P20160 251 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 MIR17HGQ75NE6 70 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 ASB13Q8WXK3 278 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 FAM19A4Q96LR4 140 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 AAMDCQ9H7C9 122 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 TIMM9Q9Y5J7 89 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 ALG5Q9Y673 324 aa11.36□□□□□ -0.59
CCDC88C-209ENST00000554872 M0R3E3 92 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 IFNA5P01569 189 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 NBEAP1P0C6P0 100 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 C9orf47Q6ZRZ4 202 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 LYPD1Q8N2G4 141 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 POM121L12Q8N7R1 296 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 FXYD5Q96DB9 178 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 LINC00477Q96M19 166 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 OR51M1Q9H341 326 aa11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 TIMM8BQ9Y5J9 83 aaPredicted RBP11.35□□□□□ -0.59
CCDC88C-209ENST00000554872 FRAS1Q86XX4 4008 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 BIRC6Q9NR09 4857 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 TRBV7-9A0A0J9YWB2 115 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 KLLNB2CW77 178 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 PRM2P04554 102 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 SLC25A5P05141 298 aaKnown RBP11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 CRISP2P16562 243 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 KIR3DS1Q14943 382 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 LINC00612Q8N6U2 182 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 C15orf53Q8NAA6 179 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 PYGO2Q9BRQ0 406 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 LINC00467Q9BRT7 94 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 PAXXQ9BUH6 204 aa11.34□□□□□ -0.59
CCDC88C-209ENST00000554872 CBY3A6NI87 242 aa11.33□□□□□ -0.6
CCDC88C-209ENST00000554872 SCGB1C1Q8TD33 95 aa11.33□□□□□ -0.6
CCDC88C-209ENST00000554872 RNF141Q8WVD5 230 aa11.33□□□□□ -0.6
CCDC88C-209ENST00000554872 PLA2G2EQ9NZK7 142 aa11.33□□□□□ -0.6
CCDC88C-209ENST00000554872 TAS2R45P59539 299 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 ICAM4Q14773 271 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 RNF212Q495C1 297 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 KHDC3LQ587J8 217 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 FFAR4Q5NUL3 377 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 CCDC28AQ8IWP9 274 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 EXOC3-AS1Q8N2X6 119 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 BLNKQ8WV28 456 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 ZNF503Q96F45 646 aa11.32□□□□□ -0.6
CCDC88C-209ENST00000554872 C7orf71A4D174 169 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 RBAKDNA6NC62 111 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 OR7C2O60412 319 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 ATP5G1P05496 136 aa11.31□□□□□ -0.6
CCDC88C-209ENST00000554872 PRB4P10163 310 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms