RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SLC35B3Q9H1N7 401 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 RFNGQ9Y644 331 aa10.43□□□□□ -0.74
CCDC88C-207ENST00000554051 JTBO76095 146 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 HBE1P02100 147 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 NBEAP1P0C6P0 100 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 CDKN1BP46527 198 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 RNF141Q8WVD5 230 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 TMEM208Q9BTX3 173 aa10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 KLK5Q9Y337 293 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-207ENST00000554051 C11orf94C9JXX5 98 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 NPIPB6E9PJ23 425 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 H3BTX0 84 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 HLA-DMBP28068 263 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 LEPP41159 167 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 CSN1S1P47710 185 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 CDC34P49427 236 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 SPINK13Q1W4C9 94 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 Q5BKY6 102 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 FAM74A1Q5RGS3 127 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 BLNKQ8WV28 456 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 FXYD5Q96DB9 178 aa10.41□□□□□ -0.74
CCDC88C-207ENST00000554051 NBEAL2Q6ZNJ1 2754 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 ARPC5O15511 151 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 NDUFB4O95168 129 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 ATP6V0CP27449 155 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 FXYD7P58549 80 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 RRN3P1Q2M238 152 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 OR10G4Q8NGN3 311 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 OR10G9Q8NGN4 311 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 OR10G7Q8NGN6 311 aa10.4□□□□□ -0.74
CCDC88C-207ENST00000554051 G3V3Q6 166 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 M0R2Z0 102 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 SNRPCP09234 159 aaKnown RBP10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 OR10J4P0C629 311 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 PMS2P11Q13670 270 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 CEMP1Q6PRD7 247 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 RXFP4Q8TDU9 374 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 LINC00477Q96M19 166 aa10.39□□□□□ -0.75
CCDC88C-207ENST00000554051 IGHV3OR16-12A0A075B7B8 117 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 TRBV7-9A0A0J9YWB2 115 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RBAKDNA6NC62 111 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 HMSDA8MTL9 139 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 SLC25A5P05141 298 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RBMY1A1P0DJD3 496 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RBMY1CP0DJD4 496 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RAB2AP61019 212 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 ICAM4Q14773 271 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RBMY1FQ15415 496 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 RPL7L1Q6DKI1 246 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 FAM122CQ6P4D5 195 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 C1orf158Q8N1D5 194 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 ARL6IP6Q8N6S5 226 aa10.38□□□□□ -0.75
CCDC88C-207ENST00000554051 A0A0D9SG52 128 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 LOC102723971A0A1B0GUV8 181 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 H7BYZ3 331 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 CRXO43186 299 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 NMBP08949 121 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 STAG3L2P0CL84 134 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 STAG3L3P0CL85 134 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 SPART-AS1P0CW21 52 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 TCTAP57738 103 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 TAS2R60P59551 318 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 EIF5AP63241 154 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 TMEM78Q5T7P6 136 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 BAP18Q8IXM2 172 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 RPP25LQ8N5L8 163 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 PHLDA1Q8WV24 401 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 PHYHIPLQ96FC7 376 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 ARPC5LQ9BPX5 153 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 ACTR3CQ9C0K3 210 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 Q9H3A6 140 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 OTORQ9NRC9 128 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 DNAH7Q8WXX0 4024 aa10.37□□□□□ -0.75
CCDC88C-207ENST00000554051 PRAC2D3DTV9 90 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 M0R3E3 92 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 DEFB4AO15263 64 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 AKR1C8PQ5T2L2 129 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 C9orf47Q6ZRZ4 202 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 EXOC3-AS1Q8N2X6 119 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 KCNRGQ8N5I3 272 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 CMTM2Q8TAZ6 248 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 ZNF503Q96F45 646 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 TMEM167BQ9NRX6 74 aa10.36□□□□□ -0.75
CCDC88C-207ENST00000554051 SERTM2A0A1B0GWG4 89 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 KANTRA0A1W2PQU2 76 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 CXorf1O96002 111 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 ARL14EPLP0DKL9 152 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 NANOS2P60321 138 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 RANP62826 216 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 ZNF493Q6ZR52 646 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 C16orf74Q96GX8 76 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 NIPSNAP3BQ9BS92 247 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 SH3BGRL3Q9H299 93 aa10.35□□□□□ -0.75
CCDC88C-207ENST00000554051 TRAV12-2A0A075B6T6 113 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 TRAV10A0A0B4J240 114 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 LCE6AA0A183 80 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 CTXND1A0A1B0GTU2 59 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 CRISP2P16562 243 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 TMED6Q8WW62 240 aa10.34□□□□□ -0.75
CCDC88C-207ENST00000554051 RAB24Q969Q5 203 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms