RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, human

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-215	ENST00000552823	CD99	P14209	185 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	ODF1	Q14990	250 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	KHDC1L	Q5JSQ8	128 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	C10orf99	Q6UWK7	81 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	STXBP6	Q8NFX7	210 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	OR11H6	Q8NGC7	330 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	GRAMD2B	Q96HH9	432 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	KLK15	Q9H2R5	256 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	RPP21	Q9H633	154 aa	Known RBP	4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	HIF1AN	Q9NWT6	349 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823		A0A1W2PS18	150 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823		A8MWL6	223 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	EREG	O14944	169 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	FSTL3	O95633	263 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	CTSG	P08311	255 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	ATP5I	P56385	69 aa	Predicted RBP	4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	PKIA	P61925	76 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	TMEM183B	Q1AE95	376 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	FAM71F2	Q6NXP2	309 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	IL17REL	Q6ZVW7	336 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	SHANK2-AS3	Q9BTD1	123 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	VAMP8	Q9BV40	100 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	C1RL	Q9NZP8	487 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	RABAC1	Q9UI14	185 aa		4.37	□□□□□ -1.71
LIMA1-215	ENST00000552823	TRBV19	A0A075B6N1	114 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	FNDC10	F2Z333	226 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823		M0R1W7	72 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	HTN1	P15515	57 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	TMEM249	Q2WGJ8	235 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	CYB5R2	Q6BCY4	276 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823		Q86TA4	180 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	TXN2	Q99757	166 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	PRORY	Q9H606	182 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	MSRB1	Q9NZV6	116 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823		F6UB75	175 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823		K7EQM0	130 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	AVP	P01185	164 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	EDN2	P20800	178 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	YPEL3	P61236	119 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	WDR73	Q6P4I2	378 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	DTX2	Q86UW9	622 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	NIT1	Q86X76	327 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	C18orf32	Q8TCD1	76 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	TSKU	Q8WUA8	353 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	ZNF414	Q96IQ9	312 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	BBC3	Q96PG8	261 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	SIRPD	Q9H106	197 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	OTOR	Q9NRC9	128 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	IGLV11-55	A0A075B6I3	123 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	TMEM189	A5PLL7	270 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	SMAD7	O15105	426 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	HLA-DQA1	P01909	254 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	GPX1	P07203	203 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	C3orf79	P0CE67	100 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	RAB4A	P20338	218 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	EVI2A	P22794	236 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	TWIST1	Q15672	202 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823		Q6ZVH6	145 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	C8orf31	Q8N9H6	132 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	MRPL27	Q9P0M9	148 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	UFC1	Q9Y3C8	167 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	MXRA5	Q9NR99	2828 aa		4.36	□□□□□ -1.71
LIMA1-215	ENST00000552823	ODF3B	A8MYP8	253 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	RNF223	E7ERA6	249 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	IGF1	P05019	195 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	EGR2	P11161	476 aa	Predicted RBP	4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	KRTAP10-9	P60411	292 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	HBB	P68871	147 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	LYZL1	Q6UWQ5	148 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	SIGLEC15	Q6ZMC9	328 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	AMN1	Q8IY45	258 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	OR8A1	Q8NGG7	326 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	PRSS3P2	Q8NHM4	247 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	PIMREG	Q9BSJ6	248 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	GNB1L	Q9BYB4	327 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	GCN1	Q92616	2671 aa	Known RBP	4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	SMIM27	A0A1W2PRY6	76 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823		H3BRN7	92 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	GOSR1	O95249	250 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	TOMM40	O96008	361 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	GATA1	P15976	413 aa	Predicted RBP	4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	CRIP1	P50238	77 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	ZNF80	P51504	273 aa	Predicted RBP	4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	UBE2E1	P51965	193 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	ATP5G2	Q06055	141 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	WIPF2	Q8TF74	440 aa	Predicted RBP	4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	C16orf92	Q96LL3	132 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823	C18orf15	Q96N68	181 aa		4.35	□□□□□ -1.71
LIMA1-215	ENST00000552823		F8W735	103 aa	Predicted RBP	4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	SH2D1A	O60880	128 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	ZNF324	O75467	553 aa	Predicted RBP	4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	FAM106A	Q4KMX7	169 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	SPATA45	Q537H7	98 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	UNQ9165/PRO28630	Q6UXU0	137 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	MBD6	Q96DN6	1003 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	DUX3	Q96PT4	197 aa		4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	TEP1	Q99973	2627 aa	Known RBP	4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.34	□□□□□ -1.71
LIMA1-215	ENST00000552823	TRAV41	A0A0B4J266	112 aa		4.34	□□□□□ -1.71

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