RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 OVOL2Q9BRP0 275 aa11.89□□□□□ -0.51
CHMP1A-209ENST00000550872 AAMDCQ9H7C9 122 aa11.89□□□□□ -0.51
CHMP1A-209ENST00000550872 SEC11BP0C7V7 166 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 HIST1H1AQ02539 215 aaPredicted RBP11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 BAP18Q8IXM2 172 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 EXOC3-AS1Q8N2X6 119 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 RNF183Q96D59 192 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 CLUHP3Q96NS8 147 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 PRELID1Q9Y255 219 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 TP53TG1Q9Y2A0 90 aa11.88□□□□□ -0.51
CHMP1A-209ENST00000550872 GIG44P09565 113 aaPredicted RBP11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 STAG3L2P0CL84 134 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 STAG3L3P0CL85 134 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 ARL14EPLP0DKL9 152 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 TPT1P13693 172 aaKnown RBP11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 C4BPBP20851 252 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 CNN1P51911 297 aaKnown RBP11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 FXYD7P58549 80 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 RANP62826 216 aaKnown RBP11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 ICAM4Q14773 271 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 PHYHIPLQ96FC7 376 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 COL7A1Q02388 2944 aa11.87□□□□□ -0.51
CHMP1A-209ENST00000550872 CTXND1A0A1B0GTU2 59 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 PRAC2D3DTV9 90 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 M0R3E3 92 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 OR10J6PQ8NGY7 276 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 MRPL53Q96EL3 112 aaKnown RBP11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 C1QTNF4Q9BXJ3 329 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 PPP1R14DQ9NXH3 145 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 XCL2Q9UBD3 114 aa11.86□□□□□ -0.51
CHMP1A-209ENST00000550872 A8MTW9 85 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 CXorf1O96002 111 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 ZNF726P1Q15940 193 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 SSX7Q7RTT5 188 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 LYPD1Q8N2G4 141 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 C9orf62Q8N4C0 152 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 SLC35B3Q9H1N7 401 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 Q9H3A6 140 aa11.85□□□□□ -0.51
CHMP1A-209ENST00000550872 GCHFRP30047 84 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 AMTNQ6UX39 209 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 IQCF2Q8IXL9 164 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 STOML3Q8TAV4 291 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 TMED6Q8WW62 240 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 RARRES2Q99969 163 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 PLA2G2EQ9NZK7 142 aa11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 KMT2CQ8NEZ4 4911 aaKnown RBP11.84□□□□□ -0.51
CHMP1A-209ENST00000550872 UMAD1C9J7I0 102 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 CSN1S1P47710 185 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 SLC51BQ86UW2 128 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 CSNK1G2-AS1Q8NCQ2 148 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 OR11H2Q8NH07 326 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 TMEM167BQ9NRX6 74 aa11.83□□□□□ -0.52
CHMP1A-209ENST00000550872 DNAH9Q9NYC9 4486 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 PGPA6NDG6 321 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 FAM74A1Q5RGS3 127 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 EIF5AL1Q6IS14 154 aaKnown RBP11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 FAM213BQ8TBF2 198 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 OTORQ9NRC9 128 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 STAB2Q8WWQ8 2551 aa11.82□□□□□ -0.52
CHMP1A-209ENST00000550872 MAP1LC3B2A6NCE7 125 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 BOLA2-SMG1P6H3BVE0 249 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 M0R2Z0 102 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 AMBPP02760 352 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 FHITP49789 147 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 NKX2-5P52952 324 aaPredicted RBP11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 FGF8P55075 233 aaPredicted RBP11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 ERCC8Q13216 396 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 SPINK13Q1W4C9 94 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 CMTM2Q8TAZ6 248 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 SUN5Q8TC36 379 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 RXFP4Q8TDU9 374 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 MAP1LC3BQ9GZQ8 125 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 TMPRSS5Q9H3S3 457 aa11.81□□□□□ -0.52
CHMP1A-209ENST00000550872 IGKV2-40A0A087WW87 121 aaPredicted RBP11.8□□□□□ -0.52
CHMP1A-209ENST00000550872 NPIPB6E9PJ23 425 aa11.8□□□□□ -0.52
CHMP1A-209ENST00000550872 IGKV2D-40P01614 121 aaPredicted RBP11.8□□□□□ -0.52
CHMP1A-209ENST00000550872 DPPA3Q6W0C5 159 aa11.8□□□□□ -0.52
CHMP1A-209ENST00000550872 WWC2-AS2Q96NR7 200 aa11.8□□□□□ -0.52
CHMP1A-209ENST00000550872 IGHV3OR16-12A0A075B7B8 117 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 CT45A10P0DMU9 189 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 TSPOP30536 169 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 IGF2BP2-AS1Q96M15 143 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 LINC00477Q96M19 166 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 AGPAT4-IT1Q9H0P7 198 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 RPH3ALQ9UNE2 315 aa11.79□□□□□ -0.52
CHMP1A-209ENST00000550872 SLC25A5P05141 298 aaKnown RBP11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 CDKN1BP46527 198 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 SUMO1P63165 101 aaKnown RBP11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 C9orf47Q6ZRZ4 202 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 SFT2D1Q8WV19 159 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 MBD3L1Q8WWY6 194 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 VGLL1Q99990 258 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 EDA2RQ9HAV5 297 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 GOLT1BQ9Y3E0 138 aa11.78□□□□□ -0.52
CHMP1A-209ENST00000550872 TRAV12-2A0A075B6T6 113 aa11.77□□□□□ -0.53
CHMP1A-209ENST00000550872 ZNF705EA8MWA4 302 aaPredicted RBP11.77□□□□□ -0.53
CHMP1A-209ENST00000550872 DIRC3C9JPN6 131 aa11.77□□□□□ -0.53
CHMP1A-209ENST00000550872 CRXO43186 299 aaPredicted RBP11.77□□□□□ -0.53
CHMP1A-209ENST00000550872 INSP01308 110 aa11.77□□□□□ -0.53
CHMP1A-209ENST00000550872 H2AFB1P0C5Y9 115 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms