RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 NUDT15Q9NV35 164 aa12.18□□□□□ -0.46
CHMP1A-205ENST00000548650 PXMP4Q9Y6I8 212 aa12.18□□□□□ -0.46
CHMP1A-205ENST00000548650 FAM25EA8MYX2 175 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 CST7O76096 145 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 NUDT3O95989 172 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 VWC2Q2TAL6 325 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 MIC13Q5XKP0 118 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 NRARPQ7Z6K4 114 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 ZNF431Q8TF32 576 aaPredicted RBP12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 RNF141Q8WVD5 230 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 SAT2Q96F10 170 aaPredicted RBP12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 NOP10Q9NPE3 64 aaKnown RBP12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 WDR83OSQ9Y284 106 aa12.17□□□□□ -0.46
CHMP1A-205ENST00000548650 FAM24AA6NFZ4 105 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 BCAP31P51572 246 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 ZNF575Q86XF7 245 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 LINC00612Q8N6U2 182 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 OR10J6PQ8NGY7 276 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 UQCC1Q9NVA1 299 aa12.16□□□□□ -0.46
CHMP1A-205ENST00000548650 TRAV5A0A0B4J249 113 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 NBDYA0A0U1RRE5 68 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 UBE2L5PA0A1B0GUS4 154 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 FAM240BA0A1B0GVZ2 78 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 C5orf51A6NDU8 294 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 UPK1BO75841 260 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 H2AFB2P0C5Z0 115 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 RAB31Q13636 194 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 ODF3Q96PU9 254 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 DNAJC4Q9NNZ3 241 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 LYRM2Q9NU23 88 aaPredicted RBP12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 LINC00588Q9Y4M8 146 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 ABCA13Q86UQ4 5058 aa12.15□□□□□ -0.46
CHMP1A-205ENST00000548650 IGSF23A1L1A6 192 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 NPIPB6E9PJ23 425 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 ASAH1Q13510 395 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 GUK1Q16774 197 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 MZT2BQ6NZ67 158 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 Q6ZRG5 221 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 C12orf45Q8N5I9 185 aaPredicted RBP12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 C2orf50Q96LR7 162 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 PFDN5Q99471 154 aa12.14□□□□□ -0.47
CHMP1A-205ENST00000548650 CT45A10P0DMU9 189 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 SULT1A1P50225 295 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 S100A10P60903 97 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 IFITM3Q01628 133 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 IL15RAQ13261 267 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 OR1L4Q8NGR5 311 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 SLC39A9Q9NUM3 307 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 ZNF586Q9NXT0 402 aa12.13□□□□□ -0.47
CHMP1A-205ENST00000548650 ZNF253O75346 499 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 PVALBP20472 110 aaPredicted RBP12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 RPL29P47914 159 aaKnown RBP12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 CCL18P55774 89 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 TNP2Q05952 138 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 BAXQ07812 192 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 RAB32Q13637 225 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 TMEM252Q8N6L7 170 aa12.12□□□□□ -0.47
CHMP1A-205ENST00000548650 J3KRW8 73 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 LEPP41159 167 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 CCDC28AQ8IWP9 274 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 C6orf223Q8N319 242 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 ENKURQ8TC29 256 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 CHAC2Q8WUX2 184 aa12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 MRPL53Q96EL3 112 aaKnown RBP12.11□□□□□ -0.47
CHMP1A-205ENST00000548650 TRBV19A0A075B6N1 114 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 TRAV26-1A0A087WT03 109 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 TRAV12-3A0A0B4J271 114 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 M0R3E3 92 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 M6PRP20645 277 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 HOXA5P20719 270 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 S100A11P31949 105 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 HBG1P69891 147 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 HBG2P69892 147 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 SSX7Q7RTT5 188 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 STX12Q86Y82 276 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 TMEM14CQ9P0S9 112 aa12.1□□□□□ -0.47
CHMP1A-205ENST00000548650 GAGE12BA1L429 117 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 SNURFLB1AK76 121 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 GAGE7O76087 117 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 NDUFB4O95168 129 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 RLN2P04090 185 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 GAGE12FP0CL80 117 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 GAGE12GP0CL81 117 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 GAGE12IP0CL82 117 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 FGF7P21781 194 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 CLINT1Q14677 625 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 GNPNAT1Q96EK6 184 aaPredicted RBP12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 ZNF503Q96F45 646 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 PYGO2Q9BRQ0 406 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 HSPG2P98160 4391 aa12.09□□□□□ -0.47
CHMP1A-205ENST00000548650 PYYP10082 97 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 OR5I1Q13606 314 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 GCSAMLQ5JQS6 135 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 RXFP4Q8TDU9 374 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 FAM19A4Q96LR4 140 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 NPCDR1Q9BY65 106 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 KRTAP1-5Q9BYS1 174 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 TMPRSS5Q9H3S3 457 aa12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 GPN1Q9HCN4 374 aaPredicted RBP12.08□□□□□ -0.48
CHMP1A-205ENST00000548650 A0A0J9YY99 117 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms