RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SRPXP78539 464 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 ACOT7LQ6ZUV0 252 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 KRTAP19-1Q8IUB9 90 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 CIB3Q96Q77 187 aaPredicted RBP8.59□□□□□ -1.03
SCAF11-208ENST00000546534 PRRT1Q99946 306 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 TRGV1A0A0A0MS02 117 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 LINC00854A0A1B0GVQ3 168 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 WRBO00258 174 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 PLA2G1BP04054 148 aaKnown RBP8.58□□□□□ -1.04
SCAF11-208ENST00000546534 LINC00869P0C866 280 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 ANXA7P20073 488 aaKnown RBP8.58□□□□□ -1.04
SCAF11-208ENST00000546534 PLP1P60201 277 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 RPP30P78346 268 aaKnown RBP8.58□□□□□ -1.04
SCAF11-208ENST00000546534 SPANXN5Q5MJ07 72 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 PATE2Q6UY27 113 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 CLVS1Q8IUQ0 354 aaPredicted RBP8.58□□□□□ -1.04
SCAF11-208ENST00000546534 C11orf72Q8NBR9 251 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 ZNF431Q8TF32 576 aaPredicted RBP8.58□□□□□ -1.04
SCAF11-208ENST00000546534 AP3S1Q92572 193 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 PYGO2Q9BRQ0 406 aa8.58□□□□□ -1.04
SCAF11-208ENST00000546534 SMCO3A2RU48 225 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 SYNGR2O43760 224 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 MED6O75586 246 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 IGHV3-53P01767 116 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 CT45A10P0DMU9 189 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 ANXA3P12429 323 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 CXCL2P19875 107 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 MRPS10P82664 201 aaKnown RBP8.57□□□□□ -1.04
SCAF11-208ENST00000546534 LCN15Q6UWW0 184 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 WFDC10BQ8IUB3 73 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 ZBTB8BQ8NAP8 495 aaPredicted RBP8.57□□□□□ -1.04
SCAF11-208ENST00000546534 DEFB104AQ8WTQ1 72 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 NTN5Q8WTR8 489 aaPredicted RBP8.57□□□□□ -1.04
SCAF11-208ENST00000546534 SMIM4Q8WVI0 70 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 SCGB3A2Q96PL1 93 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 SLC50A1Q9BRV3 221 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 MIXL1Q9H2W2 232 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 VCX3AQ9NNX9 186 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 PRO0255Q9UI72 69 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 KLF12Q9Y4X4 402 aa8.57□□□□□ -1.04
SCAF11-208ENST00000546534 A0A087WXM4 84 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 LRCOL1A6NCL2 159 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 H3BP45 60 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 H3BTX0 84 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 K7EP13 123 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 SLC17A3O00476 420 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 PRAF2O60831 178 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 ATP6V1G2O95670 118 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 SLC25A6P12236 298 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 EVI2AP22794 236 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 LEPP41159 167 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 SELENOTP62341 195 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 SRSF3P84103 164 aaKnown RBP8.56□□□□□ -1.04
SCAF11-208ENST00000546534 MRPL23Q16540 153 aaKnown RBP8.56□□□□□ -1.04
SCAF11-208ENST00000546534 TEPPQ6URK8 271 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 NEGR1Q7Z3B1 354 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 ZNF680Q8NEM1 530 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 ARL6Q9H0F7 186 aa8.56□□□□□ -1.04
SCAF11-208ENST00000546534 DUXBA0A1W2PPF3 345 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 SPINK4O60575 86 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 CRYBA4P53673 196 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 S100A7AQ86SG5 101 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 ST6GAL2Q96JF0 529 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 C8orf49Q96NF6 230 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 ARV1Q9H2C2 271 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 SCP2D1Q9UJQ7 156 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 PLA2G2DQ9UNK4 145 aa8.55□□□□□ -1.04
SCAF11-208ENST00000546534 STRAPQ9Y3F4 350 aaKnown RBP8.55□□□□□ -1.04
SCAF11-208ENST00000546534 ANKRD20A5PA0PJZ0 165 aa8.54□□□□□ -1.04
SCAF11-208ENST00000546534 FHL2Q14192 279 aa8.54□□□□□ -1.04
SCAF11-208ENST00000546534 ODF3Q96PU9 254 aa8.54□□□□□ -1.04
SCAF11-208ENST00000546534 NAA50Q9GZZ1 169 aaKnown RBP8.54□□□□□ -1.04
SCAF11-208ENST00000546534 HHLA3Q9XRX5 114 aa8.54□□□□□ -1.04
SCAF11-208ENST00000546534 PIGBOS1A0A0B4J2F0 54 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 C7orf71A4D174 169 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 CTDSP2O14595 271 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 RGS5O15539 181 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 PSCAO43653 123 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 CRYGDP07320 174 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 TCL1AP56279 114 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 SLAQ13239 276 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 ANXA2RQ3ZCQ2 193 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 LINC00305Q7Z4B0 112 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 BPIFA4PQ86YQ2 179 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 LRTM2Q8N967 370 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 SAT2Q96F10 170 aaPredicted RBP8.53□□□□□ -1.04
SCAF11-208ENST00000546534 MCUBQ9NWR8 336 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 MRPL16Q9NX20 251 aaKnown RBP8.53□□□□□ -1.04
SCAF11-208ENST00000546534 RNF24Q9Y225 148 aa8.53□□□□□ -1.04
SCAF11-208ENST00000546534 H3BQ15 152 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 CTDSPLO15194 276 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 C1QBP02746 253 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 SLC25A5P05141 298 aaKnown RBP8.52□□□□□ -1.05
SCAF11-208ENST00000546534 RRAS2P62070 204 aaPredicted RBP8.52□□□□□ -1.05
SCAF11-208ENST00000546534 CTF1Q16619 201 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 MORN5Q5VZ52 161 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 EIF4E3Q8N5X7 224 aaKnown RBP8.52□□□□□ -1.05
SCAF11-208ENST00000546534 Q8N814 137 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 VGLL1Q99990 258 aa8.52□□□□□ -1.05
SCAF11-208ENST00000546534 MRPL32Q9BYC8 188 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms