RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ZNF414Q96IQ9 312 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 C17orf100A8MU93 164 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 IGLV1-44P01699 117 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 EMP1P54849 157 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 DEFB1P60022 68 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 ADIPOQQ15848 244 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 SMIM15Q7Z3B0 74 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 PPP1R27Q86WC6 154 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 CACNG8Q8WXS5 425 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 RAI1Q7Z5J4 1906 aaPredicted RBP11.62□□□□□ -0.55
HOXC11-202ENST00000546378 TRAV30A0A087WSZ9 112 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 RIGQ13278 110 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 FAM169BQ8N8A8 192 aa11.62□□□□□ -0.55
HOXC11-202ENST00000546378 FAM90A9PA6NNJ1 464 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 CGB3P0DN86 165 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 CGB7P0DN87 165 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 TMEM249Q2WGJ8 235 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 OR4A5Q8NH83 315 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 JMJD8Q96S16 334 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 PPP1R14DQ9NXH3 145 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 BSNQ9UPA5 3926 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 ZNF785A8K8V0 405 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 TIMM23O14925 209 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 LTAP01374 205 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 ST20Q9HBF5 79 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 PEF1Q9UBV8 284 aaKnown RBP11.61□□□□□ -0.55
HOXC11-202ENST00000546378 K7EQM0 130 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 LHBP01229 141 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 NEU4Q8WWR8 484 aaPredicted RBP11.61□□□□□ -0.55
HOXC11-202ENST00000546378 AAMDCQ9H7C9 122 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 SIGLEC8Q9NYZ4 499 aa11.61□□□□□ -0.55
HOXC11-202ENST00000546378 ZFHX3Q15911 3703 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 A0A0G2JLM5 398 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 A1L4Q6 167 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 NDUFA3O95167 84 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 SCGB2A2Q13296 93 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 C3orf36Q3SXR2 165 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 Q6ZQT7 251 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 C1orf162Q8NEQ5 155 aaPredicted RBP11.6□□□□□ -0.55
HOXC11-202ENST00000546378 FOXC2Q99958 501 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 FNDC10F2Z333 226 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 NPYP01303 97 aa11.6□□□□□ -0.55
HOXC11-202ENST00000546378 CRYBG3Q68DQ2 2970 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 PSMB11A5LHX3 300 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 GRNP28799 593 aaKnown RBP11.59□□□□□ -0.55
HOXC11-202ENST00000546378 KLRB1Q12918 225 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 OR5AN1Q8NGI8 311 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 IGHV1-8P0DP01 117 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 LEPP41159 167 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 TMEM167AQ8TBQ9 72 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 FMC1Q96HJ9 113 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 C19orf24Q9BVV8 132 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 NGBQ9NPG2 151 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 SCRT2Q9NQ03 307 aa11.59□□□□□ -0.55
HOXC11-202ENST00000546378 IGLV3-9A0A075B6K5 115 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 TOMM40O96008 361 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 GP9P14770 177 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 ARL3P36405 182 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 HIST1H1AQ02539 215 aaPredicted RBP11.58□□□□□ -0.56
HOXC11-202ENST00000546378 PSG3Q16557 428 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 DEFB125Q8N687 156 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 OR2K2Q8NGT1 345 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 C8orf46Q8TAG6 207 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 GLMPQ8WWB7 406 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 VGLL1Q99990 258 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 ZNF747Q9BV97 191 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 SIGLEC9Q9Y336 463 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 CSMD2Q7Z408 3487 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 CDKN1BP46527 198 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 NDPQ00604 133 aa11.58□□□□□ -0.56
HOXC11-202ENST00000546378 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.58□□□□□ -0.56
HOXC11-202ENST00000546378 PPIAL4CA0A0B4J2A2 164 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 PPIAL4GP0DN37 164 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 STXBP6Q8NFX7 210 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 LOXP28300 417 aaPredicted RBP11.57□□□□□ -0.56
HOXC11-202ENST00000546378 CRIP1P50238 77 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 RNF125Q96EQ8 232 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 SPOCK3Q9BQ16 436 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 A0A1B0GXF2 115 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 ZNF833PQ6ZTB9 187 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 FER1L6-AS1Q8NA97 138 aa11.57□□□□□ -0.56
HOXC11-202ENST00000546378 ITPR1Q14643 2758 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 SH2D1AO60880 128 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 IGLV2-23P01705 113 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 IFI27L1Q96BM0 104 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 IGHV1-3A0A0C4DH29 117 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 TMEM178BH3BS89 294 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 SH2D6Q7Z4S9 175 aa11.56□□□□□ -0.56
HOXC11-202ENST00000546378 IGKV1-17P01599 117 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 IGLC1P0CG04 106 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 EFNA4P52798 201 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 GTF2H5Q6ZYL4 71 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 JMJD1CQ15652 2540 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 IGKV2D-26A0A0A0MRZ7 120 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 A6NDN8 102 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 H7C2G1 150 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 MRPL51Q4U2R6 128 aaKnown RBP11.55□□□□□ -0.56
HOXC11-202ENST00000546378 FAM231DQ6ZW35 169 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 ORMDL3Q8N138 153 aa11.55□□□□□ -0.56
HOXC11-202ENST00000546378 FXYD2P54710 66 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms