RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 PRM2P04554 102 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 IGLC2P0DOY2 106 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 S100A11P31949 105 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 LEPP41159 167 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 CCL18P55774 89 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 S100A10P60903 97 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 RNASE8Q8TDE3 154 aaKnown RBP9.24□□□□□ -0.93
RTN3-212ENST00000543123 ODF3Q96PU9 254 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 WDR83OSQ9Y284 106 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 PCLOQ9Y6V0 5065 aa9.24□□□□□ -0.93
RTN3-212ENST00000543123 PKD1P98161 4303 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 ZNF253O75346 499 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 RPL29P47914 159 aaKnown RBP9.23□□□□□ -0.93
RTN3-212ENST00000543123 SULT1A1P50225 295 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 BAXQ07812 192 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 VWC2Q2TAL6 325 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 SEC22CQ9BRL7 303 aa9.23□□□□□ -0.93
RTN3-212ENST00000543123 NOP10Q9NPE3 64 aaKnown RBP9.23□□□□□ -0.93
RTN3-212ENST00000543123 LYRM2Q9NU23 88 aaPredicted RBP9.23□□□□□ -0.93
RTN3-212ENST00000543123 UBE2L5PA0A1B0GUS4 154 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 FAM240BA0A1B0GVZ2 78 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 SNURFLB1AK76 121 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 SLC17A3O00476 420 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 MPDU1O75352 247 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 SNRPCP09234 159 aaKnown RBP9.22□□□□□ -0.93
RTN3-212ENST00000543123 H2AFB2P0C5Z0 115 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 CLINT1Q14677 625 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 FCN2Q15485 313 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 ATP6V1FQ16864 119 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 GFI1BQ5VTD9 330 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 MIC13Q5XKP0 118 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 MZT2BQ6NZ67 158 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 MRPL53Q96EL3 112 aaKnown RBP9.22□□□□□ -0.93
RTN3-212ENST00000543123 SLC39A9Q9NUM3 307 aa9.22□□□□□ -0.93
RTN3-212ENST00000543123 NACAE9PAV3 2078 aa9.21□□□□□ -0.93
RTN3-212ENST00000543123 FAM24AA6NFZ4 105 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 NPIPB6E9PJ23 425 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 H3BQ15 152 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 H3BTX0 84 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 RLN2P04090 185 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 MORN5Q5VZ52 161 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 LINC00299Q6ZSB3 139 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 CHAC2Q8WUX2 184 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 SAT2Q96F10 170 aaPredicted RBP9.21□□□□□ -0.94
RTN3-212ENST00000543123 PYGO2Q9BRQ0 406 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 PRELID1Q9Y255 219 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 DNAH11Q96DT5 4516 aa9.21□□□□□ -0.94
RTN3-212ENST00000543123 NBDYA0A0U1RRE5 68 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 PRAC2D3DTV9 90 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 M6PRP20645 277 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 FGF7P21781 194 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 PDE6HQ13956 83 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 TMEM252Q8N6L7 170 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 ZNRF2Q8NHG8 242 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 RNF141Q8WVD5 230 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 ZNF503Q96F45 646 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 C11orf1Q9H5F2 150 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 GPN1Q9HCN4 374 aaPredicted RBP9.2□□□□□ -0.94
RTN3-212ENST00000543123 KCNIP2Q9NS61 270 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 TMEM14CQ9P0S9 112 aa9.2□□□□□ -0.94
RTN3-212ENST00000543123 TRBV19A0A075B6N1 114 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 IGSF23A1L1A6 192 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 A6NHS1 94 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 SLC25A5P05141 298 aaKnown RBP9.19□□□□□ -0.94
RTN3-212ENST00000543123 PRB4P10163 310 aaPredicted RBP9.19□□□□□ -0.94
RTN3-212ENST00000543123 OR5I1Q13606 314 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 RAB32Q13637 225 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 ZNF680Q8NEM1 530 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 S100ZQ8WXG8 99 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 GNPNAT1Q96EK6 184 aaPredicted RBP9.19□□□□□ -0.94
RTN3-212ENST00000543123 KRTAP17-1Q9BYP8 105 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 AAMDCQ9H7C9 122 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 ZNF586Q9NXT0 402 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 TIMM9Q9Y5J7 89 aa9.19□□□□□ -0.94
RTN3-212ENST00000543123 TRAV5A0A0B4J249 113 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 TRAV12-3A0A0B4J271 114 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 J3KRW8 73 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 CT45A10P0DMU9 189 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 HIST1H1EP10412 219 aaKnown RBP9.18□□□□□ -0.94
RTN3-212ENST00000543123 DAZ2Q13117 558 aaKnown RBP9.18□□□□□ -0.94
RTN3-212ENST00000543123 TTC32Q5I0X7 151 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 C6orf223Q8N319 242 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 LINC00612Q8N6U2 182 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 PARD6GQ9BYG4 376 aaPredicted RBP9.18□□□□□ -0.94
RTN3-212ENST00000543123 SLC25A31Q9H0C2 315 aa9.18□□□□□ -0.94
RTN3-212ENST00000543123 DYNC1H1Q14204 4646 aaKnown RBP9.17□□□□□ -0.94
RTN3-212ENST00000543123 TRAV26-1A0A087WT03 109 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 GAGE12BA1L429 117 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 H3BNG1 76 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 GAGE7O76087 117 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 GAGE12FP0CL80 117 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 GAGE12GP0CL81 117 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 GAGE12IP0CL82 117 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 IL15RAQ13261 267 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 ASAH1Q13510 395 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 KIR3DS1Q14943 382 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 SSX7Q7RTT5 188 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 ENKURQ8TC29 256 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 RXFP4Q8TDU9 374 aa9.17□□□□□ -0.94
RTN3-212ENST00000543123 LINC00477Q96M19 166 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms