RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 GDF5OSQ5U4N7 250 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 SH2D6Q7Z4S9 175 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 RNASE6Q93091 150 aaKnown RBP6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 PRADC1Q9BSG0 188 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 SCRT2Q9NQ03 307 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 OSTCQ9NRP0 149 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 TANC2Q9HCD6 1990 aa6.39□□□□□ -1.39
PDLIM5-221ENST00000542407 DSCAMO60469 2012 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 SPINT2O43291 252 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 CRYGDP07320 174 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 IFITM1P13164 125 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 OPRK1P41145 380 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 LY6DQ14210 128 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 TTC32Q5I0X7 151 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 CCDC140Q96MF4 163 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 RASL11BQ9BPW5 248 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 LINC00574Q9H8X3 128 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 SLC25A10Q9UBX3 287 aaPredicted RBP6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 PKIGQ9Y2B9 76 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 DEFB108AA8MXU0 73 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 PLAUP00749 431 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 HLA-DRB1P01911 266 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 ZNF138P52744 262 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 RPS28P62857 69 aaKnown RBP6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 MIR17HGQ75NE6 70 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 ABHD12Q8N2K0 398 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 FAM216BQ8N7L0 139 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 LINC01560Q8TB33 94 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 LINC00479Q96M42 142 aa6.38□□□□□ -1.39
PDLIM5-221ENST00000542407 SMIM27A0A1W2PRY6 76 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 LINC00473A8K010 186 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 ZNF134P52741 427 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 CCL13Q99616 98 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 IFI27L2Q9H2X8 130 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 CALYQ9NYX4 217 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 LY96Q9Y6Y9 160 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 DYSFO75923 2080 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 DSCAML1Q8TD84 2053 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 IGHV1-24A0A0C4DH33 117 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 TMEM178BH3BS89 294 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 NPFFO15130 113 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 KHDC1LQ5JSQ8 128 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 HRCT1Q6UXD1 115 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 C1orf229Q6ZS94 237 aaPredicted RBP6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 C11orf52Q96A22 123 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 VGLL1Q99990 258 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 PLCE1Q9P212 2302 aa6.37□□□□□ -1.39
PDLIM5-221ENST00000542407 ZNF137PP52743 207 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 KIR3DS1Q14943 382 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 PPP1R27Q86WC6 154 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 DEFB108BQ8NET1 73 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 NUP35Q8NFH5 326 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 OR4C13Q8NGP0 309 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 LINC01587Q99440 93 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 PRNDQ9UKY0 176 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 NBEAQ8NFP9 2946 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 MPDU1O75352 247 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 IGLC6P0CF74 106 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 VKORC1L1Q8N0U8 176 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 ARPC1AQ92747 370 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 URB1-AS1Q96HZ7 61 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 TCF19Q9Y242 345 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 RP1L1Q8IWN7 2480 aaPredicted RBP6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 DUTP33316 252 aaKnown RBP6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 C3orf56Q8N813 242 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 POLEQ07864 2286 aa6.36□□□□□ -1.39
PDLIM5-221ENST00000542407 CGB1A6NKQ9 187 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 HIGD1CA8MV81 97 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 OR9G9P0C7N8 305 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 GAGE2BQ13066 116 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 GAGE2EQ4V326 116 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 FAM120AOSQ5T036 256 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 C2orf91Q6ZV80 131 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 RASL10AQ92737 203 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 GAGE2DQ9UEU5 116 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 CACNA1AO00555 2505 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 KLF5Q13887 457 aaPredicted RBP6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 ZNF672Q499Z4 452 aaPredicted RBP6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 TMEM86BQ8N661 226 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 TEX45Q8NA69 505 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 FANCD2OSQ96PS1 177 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 SIGLEC8Q9NYZ4 499 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 GNG12Q9UBI6 72 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 RABAC1Q9UI14 185 aa6.35□□□□□ -1.39
PDLIM5-221ENST00000542407 GGTLC3B5MD39 225 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 IGLV2-8P01709 118 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 FOXI1Q12951 378 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 RPL39P5Q59GN2 51 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 TEPPQ6URK8 271 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 LEAP2Q969E1 77 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 KIR2DL4Q99706 377 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 MDFICQ9P1T7 246 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 CTSZQ9UBR2 303 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 NCOR2Q9Y618 2525 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 FCGR3BO75015 233 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 IGHV3-7P01780 117 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 COX8AP10176 69 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 FHL3Q13643 280 aa6.34□□□□□ -1.39
PDLIM5-221ENST00000542407 LYPD2Q6UXB3 125 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms