RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 TMEM41BQ5BJD5 291 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 ZFAND6Q6FIF0 208 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 TCF24Q7RTU0 167 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 H2BFWTQ7Z2G1 175 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 SELENOHQ8IZQ5 122 aaKnown RBP5.44□□□□□ -1.54
LMO3-220ENST00000539232 GPR146Q96CH1 333 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 RNF2Q99496 336 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 SMIM3Q9BZL3 60 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 CSTL1Q9H114 145 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 C11orf1Q9H5F2 150 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 C19orf73Q9NVV2 129 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 MRPL27Q9P0M9 148 aaKnown RBP5.44□□□□□ -1.54
LMO3-220ENST00000539232 PRNDQ9UKY0 176 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 F11RQ9Y624 299 aaKnown RBP5.44□□□□□ -1.54
LMO3-220ENST00000539232 COX11Q9Y6N1 276 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 FRAS1Q86XX4 4008 aa5.44□□□□□ -1.54
LMO3-220ENST00000539232 IGHV3-49A0A0A0MS15 119 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 IFNA5P01569 189 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 CTSGP08311 255 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 SCGB1A1P11684 91 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 CBLN1P23435 193 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 FHITP49789 147 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 ELLP55199 621 aaPredicted RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 YPEL3P61236 119 aaPredicted RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 HSPE1P61604 102 aaKnown RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 PRCDQ00LT1 54 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 BSXQ3C1V8 233 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 GPHB5Q86YW7 130 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 TMEM61Q8N0U2 210 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 DEFB125Q8N687 156 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 RNASE8Q8TDE3 154 aaKnown RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 IL22RA2Q969J5 263 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 LSM10Q969L4 123 aaKnown RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 EEF1AKMT3Q96AZ1 226 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 CIB3Q96Q77 187 aaPredicted RBP5.43□□□□□ -1.54
LMO3-220ENST00000539232 ATP5SQ99766 215 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 ELOVL1Q9BW60 279 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 TMEM222Q9H0R3 208 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 RETNQ9HD89 108 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 MANBALQ9NQG1 85 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 SMAD5-AS1Q9Y6J3 95 aa5.43□□□□□ -1.54
LMO3-220ENST00000539232 LGALS9O00182 355 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 OR5G3P0C626 314 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 RNASE2P10153 161 aaKnown RBP5.42□□□□□ -1.54
LMO3-220ENST00000539232 SLC25A6P12236 298 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 CCL20P78556 96 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 Q0VG73 95 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 PVRIGQ6DKI7 326 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 LYZL2Q7Z4W2 148 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 OR4C5Q8NGB2 326 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 OR4A16Q8NH70 328 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 CMTM2Q8TAZ6 248 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 VN1R17PQ8TDU5 208 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 TXNDC17Q9BRA2 123 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 SRSF8Q9BRL6 282 aaKnown RBP5.42□□□□□ -1.54
LMO3-220ENST00000539232 SH3BGRL3Q9H299 93 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 FNDC4Q9H6D8 234 aaPredicted RBP5.42□□□□□ -1.54
LMO3-220ENST00000539232 PLEKHA3Q9HB20 300 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 C21orf62Q9NYP8 219 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 SIGLEC8Q9NYZ4 499 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 RCL1Q9Y2P8 373 aaKnown RBP5.42□□□□□ -1.54
LMO3-220ENST00000539232 LAMTOR2Q9Y2Q5 125 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 TIMM9Q9Y5J7 89 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 PXMP4Q9Y6I8 212 aa5.42□□□□□ -1.54
LMO3-220ENST00000539232 IGHV3OR16-13A0A075B7E8 117 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 TRBV7-1A0A0A6YYK4 115 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 IGHV3-74A0A0B4J1X5 117 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 TMEM238C9JI98 176 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 CCL25O15444 150 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 SCGB1D2O95969 90 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 MT-CO2P00403 227 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 APOHP02749 345 aaPredicted RBP5.41□□□□□ -1.54
LMO3-220ENST00000539232 NBEAP1P0C6P0 100 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 C8orf88P0DMB2 117 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 NKX2-1P43699 371 aaPredicted RBP5.41□□□□□ -1.54
LMO3-220ENST00000539232 SUMO1P63165 101 aaKnown RBP5.41□□□□□ -1.54
LMO3-220ENST00000539232 TMEM252Q8N6L7 170 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 TMEM190Q8WZ59 177 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 RPUSD4Q96CM3 377 aaKnown RBP5.41□□□□□ -1.54
LMO3-220ENST00000539232 NUDT11Q96G61 164 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 TMEM56Q96MV1 263 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 SMIM7Q9BQ49 75 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 VPS25Q9BRG1 176 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 CACNG5Q9UF02 275 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 TMEM56-RWDD3S4R434 201 aa5.41□□□□□ -1.54
LMO3-220ENST00000539232 IGHV3-66A0A0C4DH42 116 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 CBY3A6NI87 242 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 A6NJY4 79 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 CTRLP40313 264 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 PSMB3P49720 205 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 HNRNPA3P51991 378 aaKnown RBP5.4□□□□□ -1.54
LMO3-220ENST00000539232 RPL23P62829 140 aaKnown RBP5.4□□□□□ -1.54
LMO3-220ENST00000539232 PMCHL1Q16048 86 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 PSG3Q16557 428 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 Q56UQ5 140 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 NMSQ5H8A3 153 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 LINC00322Q6ZN03 302 aaPredicted RBP5.4□□□□□ -1.54
LMO3-220ENST00000539232 TMEM144Q7Z5S9 345 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 ZNF114Q8NC26 417 aa5.4□□□□□ -1.54
LMO3-220ENST00000539232 SCGB1C1Q8TD33 95 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms