RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TMEM88Q6PEY1 159 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 MORN3Q6PF18 240 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-208ENST00000532560 LINC00305Q7Z4B0 112 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 CBLN2Q8IUK8 224 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 MUC7Q8TAX7 377 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 GATAD1Q8WUU5 269 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 TMEM37Q8WXS4 190 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 NPCDR1Q9BY65 106 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 SLC39A9Q9NUM3 307 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 PRELID1Q9Y255 219 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 C9JQL5 133 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 HLA-DRB4P13762 266 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 KHDC3LQ587J8 217 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 TMEM41BQ5BJD5 291 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 SOHLH1Q5JUK2 328 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 ZNF506Q5JVG8 444 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 FOXI2Q6ZQN5 318 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 OR1L4Q8NGR5 311 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 C16orf92Q96LL3 132 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 PFDN5Q99471 154 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 DNAJC4Q9NNZ3 241 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 PXMP4Q9Y6I8 212 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 HLA-DRB4X5D2U9 266 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 AGRNO00468 2067 aa11.02□□□□□ -0.65
CPSF1-208ENST00000532560 H3BMM0 161 aa11.01□□□□□ -0.65
CPSF1-208ENST00000532560 C3orf84H3BNL1 204 aa11.01□□□□□ -0.65
CPSF1-208ENST00000532560 MRPS12O15235 138 aaKnown RBP11.01□□□□□ -0.65
CPSF1-208ENST00000532560 RAB5BP61020 215 aa11.01□□□□□ -0.65
CPSF1-208ENST00000532560 MBD3L1Q8WWY6 194 aa11.01□□□□□ -0.65
CPSF1-208ENST00000532560 WDR61Q9GZS3 305 aaKnown RBP11.01□□□□□ -0.65
CPSF1-208ENST00000532560 SAV1Q9H4B6 383 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-208ENST00000532560 KCNIP2Q9NS61 270 aa11.01□□□□□ -0.65
CPSF1-208ENST00000532560 A0A087WWC5 75 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 C7orf77A4D0Y5 90 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 COLCA2A8K830 154 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 IFNA1P01562 189 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 MBP02144 154 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 GIG44P09565 113 aaPredicted RBP11□□□□□ -0.65
CPSF1-208ENST00000532560 FHITP49789 147 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 MORN5Q5VZ52 161 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 SPATA31B1PQ5VZV4 182 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 BPIFA4PQ86YQ2 179 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 C20orf173Q96LM9 149 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 RPS10P5Q9NQ39 176 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 RPRMQ9NS64 109 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 DNAH7Q8WXX0 4024 aa11□□□□□ -0.65
CPSF1-208ENST00000532560 KMT2CQ8NEZ4 4911 aaKnown RBP11□□□□□ -0.65
CPSF1-208ENST00000532560 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 B4DEV8 164 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 M0R036 132 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 GDF5OSQ5U4N7 250 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 RXFP4Q8TDU9 374 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 CLUHP3Q96NS8 147 aa10.99□□□□□ -0.65
CPSF1-208ENST00000532560 CXorf65A6NEN9 183 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 C1orf196B1AJZ1 125 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 SRP19P09132 144 aaKnown RBP10.98□□□□□ -0.65
CPSF1-208ENST00000532560 DEFB1P60022 68 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 NUTF2P61970 127 aaKnown RBP10.98□□□□□ -0.65
CPSF1-208ENST00000532560 LCN15Q6UWW0 184 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 ZNF709Q8N972 641 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 SFT2D1Q8WV19 159 aa10.98□□□□□ -0.65
CPSF1-208ENST00000532560 A0A0J9YX75 114 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 LOC102723971A0A1B0GUV8 181 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 C17orf112F2Z3M2 114 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 IGLC2P0DOY2 106 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 PNRC1Q12796 327 aaPredicted RBP10.97□□□□□ -0.65
CPSF1-208ENST00000532560 EBLN2Q6P2I7 272 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 RARRES2Q99969 163 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 SLC50A1Q9BRV3 221 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 C1QTNF4Q9BXJ3 329 aa10.97□□□□□ -0.65
CPSF1-208ENST00000532560 A0A0J9YWU9 116 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 A8MTW9 85 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 F6UB75 175 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 ICAM4Q14773 271 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 GCSAMLQ5JQS6 135 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 CASC10Q5T4H9 136 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 RNF182Q8N6D2 247 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 OR11H2Q8NH07 326 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 IL17DQ8TAD2 202 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 HIST1H2BAQ96A08 127 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 TVP23CQ96ET8 276 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 NIPSNAP3BQ9BS92 247 aa10.96□□□□□ -0.65
CPSF1-208ENST00000532560 TRAV5A0A0B4J249 113 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 FAM78BQ5VT40 261 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 IGFL4Q6B9Z1 124 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 CSNK1G2-AS1Q8NCQ2 148 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 ZNF738Q8NE65 137 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 C11orf68Q9H3H3 251 aaKnown RBP10.95□□□□□ -0.66
CPSF1-208ENST00000532560 ZNF331Q9NQX6 463 aaPredicted RBP10.95□□□□□ -0.66
CPSF1-208ENST00000532560 TMEM14CQ9P0S9 112 aa10.95□□□□□ -0.66
CPSF1-208ENST00000532560 H3BQ15 152 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 BCL2P10415 239 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 PSG3Q16557 428 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 LINC00518Q8N0U6 118 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 OR4B1Q8NGF8 309 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 MRPL32Q9BYC8 188 aaKnown RBP10.94□□□□□ -0.66
CPSF1-208ENST00000532560 TMEM242Q9NWH2 141 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 VAX2Q9UIW0 290 aa10.94□□□□□ -0.66
CPSF1-208ENST00000532560 SLC17A3O00476 420 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 ZNF253O75346 499 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms