RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TAS2R41P59536 307 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 SNRPD2P62316 118 aaKnown RBP1.23□□□□□ -2.21
CD44-233ENST00000531141 HERVK_113P63121 156 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 BSPH1Q075Z2 132 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 FABP9Q0Z7S8 132 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 HES1Q14469 280 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 JOSD1Q15040 202 aaPredicted RBP1.23□□□□□ -2.21
CD44-233ENST00000531141 FAM229BQ4G0N7 80 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 C1orf194Q5T5A4 169 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 TOMM20LQ6UXN7 152 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 ATP5L2Q7Z4Y8 100 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 STX19Q8N4C7 294 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 TEX29Q8N6K0 151 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 ZNF439Q8NDP4 499 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 OR11H6Q8NGC7 330 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 OR52L1Q8NGH7 329 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 ZNRF2Q8NHG8 242 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 LHFPL5Q8TAF8 219 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 GNPDA2Q8TDQ7 276 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 C10orf105Q8TEF2 133 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 RASSF5Q8WWW0 418 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 ROPN1LQ96C74 230 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 GINS3Q9BRX5 216 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 TMEM70Q9BUB7 260 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 COMMD5Q9GZQ3 224 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 PARVBQ9HBI1 364 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 PRTFDC1Q9NRG1 225 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 DNAJC12Q9UKB3 198 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 HSPB11Q9Y547 144 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 TIMM22Q9Y584 194 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 FLG2Q5D862 2391 aaPredicted RBP1.23□□□□□ -2.21
CD44-233ENST00000531141 FSIP2Q5CZC0 6907 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 FAT4Q6V0I7 4981 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 HMCN2Q8NDA2 5059 aa1.23□□□□□ -2.21
CD44-233ENST00000531141 CPAMD8Q8IZJ3 1885 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 KMT2AQ03164 3969 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 IGHV3-73A0A0B4J1V6 119 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 CXorf51AA0A1B0GTR3 108 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 AIPO00170 330 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 GPR31O00270 319 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 MRASO14807 208 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 HLA-DRB1P01911 266 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 SERPINE1P05121 402 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 FGF6P10767 208 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 ORM2P19652 201 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 CCL1P22362 96 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 PPP1CCP36873 323 aaKnown RBP1.22□□□□□ -2.21
CD44-233ENST00000531141 GTF2A1P52655 376 aaPredicted RBP1.22□□□□□ -2.21
CD44-233ENST00000531141 PLGLB1Q02325 96 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 GNA12Q03113 381 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 GOLT1AQ6ZVE7 132 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 ZNF720Q7Z2F6 126 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 YIPF7Q8N8F6 280 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 GDPD1Q8N9F7 314 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 OR8B12Q8NGG6 310 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 SKA2Q8WVK7 121 aaPredicted RBP1.22□□□□□ -2.21
CD44-233ENST00000531141 GPR146Q96CH1 333 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 CNBD2Q96M20 576 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 PPP1R2P1Q96PQ5 205 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 TSPAN32Q96QS1 320 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 GPER1Q99527 375 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 CCL13Q99616 98 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 AIF1LQ9BQI0 150 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 NKX6-2Q9C056 277 aaPredicted RBP1.22□□□□□ -2.21
CD44-233ENST00000531141 C20orf27Q9GZN8 174 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 SH3BGRL3Q9H299 93 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 CISHQ9NSE2 258 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 LYRM2Q9NU23 88 aaPredicted RBP1.22□□□□□ -2.21
CD44-233ENST00000531141 CMTM6Q9NX76 183 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 SPANXCQ9NY87 97 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 TAAR3PQ9P1P4 343 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 ANAPC10Q9UM13 185 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 NDUFAF1Q9Y375 327 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 UFC1Q9Y3C8 167 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 PXMP4Q9Y6I8 212 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 DNAH10Q8IVF4 4471 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 DNAH3Q8TD57 4116 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 DSCAML1Q8TD84 2053 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 SCN3AQ9NY46 2000 aa1.22□□□□□ -2.21
CD44-233ENST00000531141 DOCK4Q8N1I0 1966 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 EXPH5Q8NEV8 1989 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 ARFGEF3Q5TH69 2177 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TMED7-TICAM2A0A0A6YYA0 188 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TRGV5A0A0B4J1U4 118 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 TRAV26-2A0A0B4J265 109 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 A0A1B0GX78 115 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 DHRS12A0PJE2 317 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 CLPSL1A2RUU4 121 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 LINC00862A6NCI5 91 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 B4DSR2 109 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 M0R381 172 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 GSTZ1O43708 216 aaPredicted RBP1.21□□□□□ -2.22
CD44-233ENST00000531141 ORC5O43913 435 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 PIAS1O75925 651 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 C1QBP02746 253 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 HLA-DQB2P05538 268 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 C8GP07360 202 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 RBP1P09455 135 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 ESDP10768 282 aa1.21□□□□□ -2.22
CD44-233ENST00000531141 SPI1P17947 270 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms