RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 OR1N2Q8NGR9 330 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 CTDSP1Q9GZU7 261 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 TUBA4BQ9H853 241 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 CHEK1O14757 476 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 TSPAN4O14817 238 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 CENPWQ5EE01 88 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 SAMD13Q5VXD3 122 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 HIST2H2BDQ6DRA6 164 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 OR11H1Q8NG94 326 aa16.12■□□□□ 0.17
VPS28-212ENST00000530836 CITED2Q99967 270 aaPredicted RBP16.12■□□□□ 0.17
VPS28-212ENST00000530836 ANAPC16Q96DE5 110 aa16.11■□□□□ 0.17
VPS28-212ENST00000530836 TRBV6-1A0A0K0K1D8 114 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 TMEM213A2RRL7 107 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 CXorf65A6NEN9 183 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 FBLL1A6NHQ2 334 aaKnown RBP16.1■□□□□ 0.17
VPS28-212ENST00000530836 DNASE2O00115 360 aaPredicted RBP16.1■□□□□ 0.17
VPS28-212ENST00000530836 SYNJ2BPP57105 145 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 OCC1Q8TAD7 63 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 MRPL53Q96EL3 112 aaKnown RBP16.1■□□□□ 0.17
VPS28-212ENST00000530836 IGF2BP2-AS1Q96M15 143 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 RPH3ALQ9UNE2 315 aa16.1■□□□□ 0.17
VPS28-212ENST00000530836 DIRC3C9JPN6 131 aa16.09■□□□□ 0.17
VPS28-212ENST00000530836 TMEM75Q8N9X5 138 aa16.09■□□□□ 0.17
VPS28-212ENST00000530836 ISOC2Q96AB3 205 aa16.09■□□□□ 0.17
VPS28-212ENST00000530836 PEMTQ9UBM1 199 aa16.09■□□□□ 0.17
VPS28-212ENST00000530836 M0QZ24 198 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 ISLRO14498 428 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 PPP1R2P9O14990 202 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 C18orf65Q6ZTR6 163 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 C8orf86Q6ZUL3 223 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 BAGE2Q86Y30 109 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 NDUFA11Q86Y39 141 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 LINC00479Q96M42 142 aa16.08■□□□□ 0.17
VPS28-212ENST00000530836 RNF212Q495C1 297 aa16.08■□□□□ 0.16
VPS28-212ENST00000530836 TMEM88Q6PEY1 159 aa16.08■□□□□ 0.16
VPS28-212ENST00000530836 GOLT1AQ6ZVE7 132 aa16.08■□□□□ 0.16
VPS28-212ENST00000530836 CBLN2Q8IUK8 224 aa16.08■□□□□ 0.16
VPS28-212ENST00000530836 NRN1Q9NPD7 142 aa16.08■□□□□ 0.16
VPS28-212ENST00000530836 BIN3Q9NQY0 253 aa16.07■□□□□ 0.16
VPS28-212ENST00000530836 TRAV34A0A0B4J273 112 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 ADARB2-AS1A8MUL3 147 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 CBLN1P23435 193 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 DEFB136Q30KP8 78 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 SFRP2Q96HF1 295 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 C16orf92Q96LL3 132 aa16.06■□□□□ 0.16
VPS28-212ENST00000530836 PGPEP1LA6NFU8 196 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 C2orf70A6NJV1 201 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 M0R3E3 92 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 GCGP01275 180 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 LTAP01374 205 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 SLURP1P55000 103 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 RPL11P62913 178 aaKnown RBP16.05■□□□□ 0.16
VPS28-212ENST00000530836 PSG3Q16557 428 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 LCN12Q6JVE5 192 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 ZFP30Q9Y2G7 519 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 RBAKDNA6NC62 111 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 IGLV2-8P01709 118 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 FHL3Q13643 280 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 NSUN5P1Q3KNT7 163 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 TCF24Q7RTU0 167 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 MLXQ9UH92 298 aa16.05■□□□□ 0.16
VPS28-212ENST00000530836 H7BYZ3 331 aa16.04■□□□□ 0.16
VPS28-212ENST00000530836 K7EN84 100 aa16.04■□□□□ 0.16
VPS28-212ENST00000530836 FLI1Q01543 452 aaPredicted RBP16.04■□□□□ 0.16
VPS28-212ENST00000530836 C15orf54Q8N8G6 183 aa16.04■□□□□ 0.16
VPS28-212ENST00000530836 OR9G4Q8NGQ1 327 aa16.04■□□□□ 0.16
VPS28-212ENST00000530836 TRAV8-2A0A0B4J237 113 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 A0A1W2PRX2 142 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 CCL24O00175 119 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 IGLV2-11P01706 119 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 Q86TA4 180 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 RAX2Q96IS3 184 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 MLST8Q9BVC4 326 aa16.03■□□□□ 0.16
VPS28-212ENST00000530836 AURKAIP1Q9NWT8 199 aaPredicted RBP16.03■□□□□ 0.16
VPS28-212ENST00000530836 SOCS3O14543 225 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 MGST1P10620 155 aaKnown RBP16.02■□□□□ 0.16
VPS28-212ENST00000530836 FOLR2P14207 255 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 TMEM183AQ8IXX5 376 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 OR10G8Q8NGN5 311 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 PSG8Q9UQ74 426 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 TRRAPQ9Y4A5 3859 aa16.02■□□□□ 0.16
VPS28-212ENST00000530836 OSTCQ9NRP0 149 aa16.01■□□□□ 0.15
VPS28-212ENST00000530836 ID1P41134 155 aa16.01■□□□□ 0.15
VPS28-212ENST00000530836 ERVFC1-1P60608 527 aa16.01■□□□□ 0.15
VPS28-212ENST00000530836 PRNTQ86SH4 94 aa16.01■□□□□ 0.15
VPS28-212ENST00000530836 DLX4Q92988 240 aaPredicted RBP16.01■□□□□ 0.15
VPS28-212ENST00000530836 IMMP2LQ96T52 175 aa16.01■□□□□ 0.15
VPS28-212ENST00000530836 TRAV8-1A0A0A6YYK1 113 aa16■□□□□ 0.15
VPS28-212ENST00000530836 SAPCD1Q5SSQ6 148 aa16■□□□□ 0.15
VPS28-212ENST00000530836 IGFL4Q6B9Z1 124 aa16■□□□□ 0.15
VPS28-212ENST00000530836 FAM231DQ6ZW35 169 aa16■□□□□ 0.15
VPS28-212ENST00000530836 SREK1IP1Q8N9Q2 155 aaPredicted RBP16■□□□□ 0.15
VPS28-212ENST00000530836 SGK494Q96LW2 274 aa16■□□□□ 0.15
VPS28-212ENST00000530836 S100PP25815 95 aa15.99■□□□□ 0.15
VPS28-212ENST00000530836 HLA-DMBP28068 263 aa15.99■□□□□ 0.15
VPS28-212ENST00000530836 RNF182Q8N6D2 247 aa15.99■□□□□ 0.15
VPS28-212ENST00000530836 DUX3Q96PT4 197 aa15.99■□□□□ 0.15
VPS28-212ENST00000530836 VWFP04275 2813 aa15.99■□□□□ 0.15
VPS28-212ENST00000530836 ZNF705FA8MVS1 300 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms