RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 Q5PR19 223 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 FBXL15Q9H469 300 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.23□□□□□ -0.61
USP48-213ENST00000529637 D6R8Y8 96 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 CD3EP07766 207 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 APOBEC3AP31941 199 aaPredicted RBP11.23□□□□□ -0.61
USP48-213ENST00000529637 LYZP61626 148 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 RPEQ96AT9 228 aa11.23□□□□□ -0.61
USP48-213ENST00000529637 SERTM2A0A1B0GWG4 89 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 CNIH1O95406 144 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 C17orf77Q96MU5 243 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 DKK2Q9UBU2 259 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 SHISA9B4DS77 424 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 RBP4P02753 201 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 FXYD2P54710 66 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 PRSS33Q8NF86 280 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 TMEM213A2RRL7 107 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 CRIP1P50238 77 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 SAMD5Q5TGI4 173 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 STXBP6Q8NFX7 210 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 ONECUT1Q9UBC0 465 aa11.22□□□□□ -0.61
USP48-213ENST00000529637 RALYQ9UKM9 306 aaKnown RBP11.22□□□□□ -0.61
USP48-213ENST00000529637 A0A1W2PRD5 423 aa11.21□□□□□ -0.61
USP48-213ENST00000529637 A0A1W2PRF3 423 aa11.21□□□□□ -0.61
USP48-213ENST00000529637 A0A1W2PRM7 423 aa11.21□□□□□ -0.61
USP48-213ENST00000529637 LINC00311Q8N616 119 aa11.21□□□□□ -0.61
USP48-213ENST00000529637 TMSB15BA0A087X1C1 80 aa11.21□□□□□ -0.62
USP48-213ENST00000529637 FABP2P12104 132 aa11.21□□□□□ -0.62
USP48-213ENST00000529637 C16orf54Q6UWD8 224 aa11.21□□□□□ -0.62
USP48-213ENST00000529637 AMN1Q8IY45 258 aa11.21□□□□□ -0.62
USP48-213ENST00000529637 TNFRSF14Q92956 283 aa11.21□□□□□ -0.62
USP48-213ENST00000529637 IGKV2D-26A0A0A0MRZ7 120 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 LY6HO94772 140 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 GCSHP23434 173 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 OR5A1Q8NGJ0 315 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 IGFBPL1Q8WX77 278 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 RELNP78509 3460 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 SMKR1H3BMG3 65 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 PSG3Q16557 428 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 LGALS9BQ3B8N2 356 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 LGALS9CQ6DKI2 356 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 SIGLEC9Q9Y336 463 aa11.2□□□□□ -0.62
USP48-213ENST00000529637 DLX6P56179 175 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 RIGQ13278 110 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 PPP1R27Q86WC6 154 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 OR9G4Q8NGQ1 327 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 DPF1Q92782 380 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 TSSC4Q9Y5U2 329 aaPredicted RBP11.19□□□□□ -0.62
USP48-213ENST00000529637 IGHV1-3A0A0C4DH29 117 aa11.19□□□□□ -0.62
USP48-213ENST00000529637 BCL6BQ8N143 479 aaPredicted RBP11.19□□□□□ -0.62
USP48-213ENST00000529637 ZNF414Q96IQ9 312 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 S4R3C0 116 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 B9A039 149 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 WFDC2Q14508 124 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 MRGPRG-AS1Q2M3A8 158 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 OR4X2Q8NGF9 303 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 INS-IGF2F8WCM5 200 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.18□□□□□ -0.62
USP48-213ENST00000529637 SMIM17P0DL12 118 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 GRNP28799 593 aaKnown RBP11.18□□□□□ -0.62
USP48-213ENST00000529637 HES1Q14469 280 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 MTURNQ8N3F0 131 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 PRELID3AQ96N28 172 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 KAAG1Q9UBP8 84 aa11.18□□□□□ -0.62
USP48-213ENST00000529637 SMIM13P0DJ93 91 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 C8orf49Q96NF6 230 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 HIGD1AQ9Y241 93 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 BUB1B-PAK6H3BSN5 160 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 TNFRSF13BO14836 293 aaPredicted RBP11.17□□□□□ -0.62
USP48-213ENST00000529637 C8orf46Q8TAG6 207 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 IFI27L1Q96BM0 104 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 SIGMAR1Q99720 223 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 RASL11BQ9BPW5 248 aa11.17□□□□□ -0.62
USP48-213ENST00000529637 CRYGCP07315 174 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 PAX8Q06710 450 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 LYZL1Q6UWQ5 148 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 SH2D6Q7Z4S9 175 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 OTORQ9NRC9 128 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 M0R3E3 92 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 NDUFS7O75251 213 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 C8orf31Q8N9H6 132 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 WFDC12Q8WWY7 111 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 TRGV9Q99603 122 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 SIVA1O15304 175 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 SCNM1Q9BWG6 230 aa11.16□□□□□ -0.62
USP48-213ENST00000529637 SPTBN4Q9H254 2564 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 NCOR2Q9Y618 2525 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 GAS8-AS1O95177 125 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 HBDP02042 147 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 VGLL1Q99990 258 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 AGRNO00468 2067 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 WI2-2373I1.2A0A1W2PRP0 233 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 GAGE12HA6NDE8 117 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 NPYP01303 97 aa11.15□□□□□ -0.62
USP48-213ENST00000529637 HOXB4P17483 251 aaPredicted RBP11.15□□□□□ -0.62
USP48-213ENST00000529637 COL25A1Q9BXS0 654 aaPredicted RBP11.15□□□□□ -0.62
USP48-213ENST00000529637 SLC25A39Q9BZJ4 359 aaPredicted RBP11.15□□□□□ -0.62
USP48-213ENST00000529637 NHP2Q9NX24 153 aaKnown RBP11.15□□□□□ -0.62
USP48-213ENST00000529637 TIMM23O14925 209 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 MRPL51Q4U2R6 128 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms