RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FAM222AQ5U5X8 452 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 BAP18Q8IXM2 172 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 FAM210BQ96KR6 192 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 ATP5SQ99766 215 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 NIPSNAP3BQ9BS92 247 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 PRELID1Q9Y255 219 aa14.75□□□□□ -0.05
VPS28-206ENST00000526734 YTHDF2Q9Y5A9 579 aaKnown RBP14.75□□□□□ -0.05
VPS28-206ENST00000526734 TRBV19A0A075B6N1 114 aa14.74□□□□□ -0.05
VPS28-206ENST00000526734 ODF3Q96PU9 254 aa14.74□□□□□ -0.05
VPS28-206ENST00000526734 MRPL32Q9BYC8 188 aaKnown RBP14.74□□□□□ -0.05
VPS28-206ENST00000526734 ZNF586Q9NXT0 402 aa14.74□□□□□ -0.05
VPS28-206ENST00000526734 HSPB11Q9Y547 144 aa14.74□□□□□ -0.05
VPS28-206ENST00000526734 HYDINQ4G0P3 5121 aa14.74□□□□□ -0.05
VPS28-206ENST00000526734 H3BTX0 84 aa14.73□□□□□ -0.05
VPS28-206ENST00000526734 SNRPCP09234 159 aaKnown RBP14.73□□□□□ -0.05
VPS28-206ENST00000526734 ZNF767PQ75MW2 155 aa14.73□□□□□ -0.05
VPS28-206ENST00000526734 LYRM9A8MSI8 78 aa14.72□□□□□ -0.05
VPS28-206ENST00000526734 RPL12P30050 165 aaKnown RBP14.72□□□□□ -0.05
VPS28-206ENST00000526734 TAS2R60P59551 318 aa14.72□□□□□ -0.05
VPS28-206ENST00000526734 NDUFAF3Q9BU61 184 aa14.72□□□□□ -0.05
VPS28-206ENST00000526734 TIMM9Q9Y5J7 89 aa14.72□□□□□ -0.05
VPS28-206ENST00000526734 TRAV12-2A0A075B6T6 113 aa14.71□□□□□ -0.05
VPS28-206ENST00000526734 IFNA5P01569 189 aa14.71□□□□□ -0.05
VPS28-206ENST00000526734 RPP25LQ8N5L8 163 aaKnown RBP14.71□□□□□ -0.05
VPS28-206ENST00000526734 PARD6GQ9BYG4 376 aaPredicted RBP14.71□□□□□ -0.05
VPS28-206ENST00000526734 MBD2Q9UBB5 411 aa14.71□□□□□ -0.05
VPS28-206ENST00000526734 NPIPB6E9PJ23 425 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 LEPP41159 167 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 GCSAMLQ5JQS6 135 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 SCGB1C1Q8TD33 95 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 LINC01587Q99440 93 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 AAMDCQ9H7C9 122 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 ALG5Q9Y673 324 aa14.7□□□□□ -0.06
VPS28-206ENST00000526734 ZNF705GA8MUZ8 300 aaPredicted RBP14.69□□□□□ -0.06
VPS28-206ENST00000526734 PRAC2D3DTV9 90 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 H7BYZ3 331 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 DAD1P61803 113 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 ZNF493Q6ZR52 646 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 C16orf74Q96GX8 76 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 SLC25A2Q9BXI2 301 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 FUT9Q9Y231 359 aa14.69□□□□□ -0.06
VPS28-206ENST00000526734 NDUFB4O95168 129 aa14.68□□□□□ -0.06
VPS28-206ENST00000526734 PYYP10082 97 aa14.68□□□□□ -0.06
VPS28-206ENST00000526734 MIR17HGQ75NE6 70 aa14.68□□□□□ -0.06
VPS28-206ENST00000526734 FAM167A-AS1Q96KT0 104 aa14.68□□□□□ -0.06
VPS28-206ENST00000526734 OR51M1Q9H341 326 aa14.68□□□□□ -0.06
VPS28-206ENST00000526734 P0DMU3 169 aa14.67□□□□□ -0.06
VPS28-206ENST00000526734 FAM231AP0DMU4 169 aa14.67□□□□□ -0.06
VPS28-206ENST00000526734 FAM231CP0DMU5 169 aa14.67□□□□□ -0.06
VPS28-206ENST00000526734 ASB13Q8WXK3 278 aa14.67□□□□□ -0.06
VPS28-206ENST00000526734 NBEAP1P0C6P0 100 aa14.66□□□□□ -0.06
VPS28-206ENST00000526734 TMEM263Q8WUH6 116 aaKnown RBP14.66□□□□□ -0.06
VPS28-206ENST00000526734 BLNKQ8WV28 456 aa14.66□□□□□ -0.06
VPS28-206ENST00000526734 PAXXQ9BUH6 204 aa14.66□□□□□ -0.06
VPS28-206ENST00000526734 MED28Q9H204 178 aa14.66□□□□□ -0.06
VPS28-206ENST00000526734 M0R3E3 92 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 TAS2R45P59539 299 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 FFAR4Q5NUL3 377 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 GFI1BQ5VTD9 330 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 CCDC28AQ8IWP9 274 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 LINC00477Q96M19 166 aa14.65□□□□□ -0.06
VPS28-206ENST00000526734 CT45A10P0DMU9 189 aa14.64□□□□□ -0.07
VPS28-206ENST00000526734 KHDC3LQ587J8 217 aa14.64□□□□□ -0.07
VPS28-206ENST00000526734 LYPD1Q8N2G4 141 aa14.64□□□□□ -0.07
VPS28-206ENST00000526734 RNF141Q8WVD5 230 aa14.64□□□□□ -0.07
VPS28-206ENST00000526734 SMIM3Q9BZL3 60 aa14.64□□□□□ -0.07
VPS28-206ENST00000526734 TIMM8BQ9Y5J9 83 aaPredicted RBP14.64□□□□□ -0.07
VPS28-206ENST00000526734 PLAC8L1A1L4L8 177 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 OR7C2O60412 319 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 SLC25A5P05141 298 aaKnown RBP14.63□□□□□ -0.07
VPS28-206ENST00000526734 AZU1P20160 251 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 ICAM4Q14773 271 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 RNASE8Q8TDE3 154 aaKnown RBP14.63□□□□□ -0.07
VPS28-206ENST00000526734 FXYD5Q96DB9 178 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 PYGO2Q9BRQ0 406 aa14.63□□□□□ -0.07
VPS28-206ENST00000526734 NMBP08949 121 aa14.62□□□□□ -0.07
VPS28-206ENST00000526734 PRB4P10163 310 aaPredicted RBP14.62□□□□□ -0.07
VPS28-206ENST00000526734 HTN3P15516 51 aa14.62□□□□□ -0.07
VPS28-206ENST00000526734 ZNF266Q14584 549 aa14.62□□□□□ -0.07
VPS28-206ENST00000526734 C9orf47Q6ZRZ4 202 aa14.62□□□□□ -0.07
VPS28-206ENST00000526734 EXOC3-AS1Q8N2X6 119 aa14.62□□□□□ -0.07
VPS28-206ENST00000526734 HTN1P15515 57 aa14.61□□□□□ -0.07
VPS28-206ENST00000526734 UBE2L3P68036 154 aaKnown RBP14.61□□□□□ -0.07
VPS28-206ENST00000526734 FCN2Q15485 313 aa14.61□□□□□ -0.07
VPS28-206ENST00000526734 ACOT6Q3I5F7 207 aaPredicted RBP14.61□□□□□ -0.07
VPS28-206ENST00000526734 TMEM78Q5T7P6 136 aa14.61□□□□□ -0.07
VPS28-206ENST00000526734 C15orf53Q8NAA6 179 aa14.61□□□□□ -0.07
VPS28-206ENST00000526734 PLA2G2EQ9NZK7 142 aa14.61□□□□□ -0.07
VPS28-206ENST00000526734 TRBV7-9A0A0J9YWB2 115 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 C7orf71A4D174 169 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 CBY3A6NI87 242 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 PRM2P04554 102 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 ATP5G1P05496 136 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 GIPP09681 153 aaPredicted RBP14.6□□□□□ -0.07
VPS28-206ENST00000526734 OR10J4P0C629 311 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 DEFB130BP0DP73 79 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 DEFB130AP0DP74 79 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 CRISP2P16562 243 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 M6PRP20645 277 aa14.6□□□□□ -0.07
VPS28-206ENST00000526734 CSN1S1P47710 185 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms