RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 SAV1Q9H4B6 383 aaPredicted RBP3.37□□□□□ -1.87
CHMP4A-202ENST00000524955 KCNIP2Q9NS61 270 aa3.37□□□□□ -1.87
CHMP4A-202ENST00000524955 HLA-DRB4X5D2U9 266 aa3.37□□□□□ -1.87
CHMP4A-202ENST00000524955 PGPA6NDG6 321 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 SPRY2O43597 315 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 TPT1P13693 172 aaKnown RBP3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 GCHFRP30047 84 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 S100A7P31151 101 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 APOC4P55056 127 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 CMC4P56277 68 aaPredicted RBP3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 TAS2R45P59539 299 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 KHDC3LQ587J8 217 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 ALKAL2Q6UX46 152 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 FOXI2Q6ZQN5 318 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 Q6ZQT7 251 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 OR8A1Q8NGG7 326 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 Q8TAT8 98 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 PCNPQ8WW12 178 aaKnown RBP3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 VGLL1Q99990 258 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 TM2D3Q9BRN9 247 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 OVOL2Q9BRP0 275 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 SLC50A1Q9BRV3 221 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 Q9H3A6 140 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 ZMAT4Q9H898 229 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 TMEM14CQ9P0S9 112 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 YTHDF2Q9Y5A9 579 aaKnown RBP3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 U3KQK5 164 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 NOTCH1P46531 2555 aa3.36□□□□□ -1.87
CHMP4A-202ENST00000524955 TRAV8-1A0A0A6YYK1 113 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 A0A0J9YWU9 116 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 MAP1LC3B2A6NCE7 125 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 TEX46H3BTG2 121 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 MBP02144 154 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SLC25A5P05141 298 aaKnown RBP3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SEC11BP0C7V7 166 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 STAG3L2P0CL84 134 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 STAG3L3P0CL85 134 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 RBMY1A1P0DJD3 496 aaKnown RBP3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 RBMY1CP0DJD4 496 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 CT45A10P0DMU9 189 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 HTN1P15515 57 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 EMP1P54849 157 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SUMO1P63165 101 aaKnown RBP3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 CCL20P78556 96 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SERF2P84101 59 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 PSG9Q00887 426 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 RBMY1FQ15415 496 aaKnown RBP3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 GUK1Q16774 197 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 AMTNQ6UX39 209 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 OR10J6PQ8NGY7 276 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 OR11H2Q8NH07 326 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SFT2D1Q8WV19 159 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 LINC00479Q96M42 142 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 RARRES2Q99969 163 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 SPATA25Q9BR10 227 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 MAP1LC3BQ9GZQ8 125 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 AGPAT4-IT1Q9H0P7 198 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 AAMDCQ9H7C9 122 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 PPP1R14DQ9NXH3 145 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 RNF24Q9Y225 148 aa3.35□□□□□ -1.87
CHMP4A-202ENST00000524955 TRAV12-3A0A0B4J271 114 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 TRAV34A0A0B4J273 112 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 IGHV4-28A0A0C4DH34 117 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 KIR2DL5BA0A0G2JN68 375 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 KIR2DL5BA0A0G2JPC4 375 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CTXND1A0A1B0GTU2 59 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 ZNF705GA8MUZ8 300 aaPredicted RBP3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 GGTLC3B5MD39 225 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 NPIPB6E9PJ23 425 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 F6UZH7 168 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CRXO43186 299 aaPredicted RBP3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 PAGE4O60829 102 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 DUSP14O95147 198 aaKnown RBP3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CXorf1O96002 111 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 H2AFB1P0C5Y9 115 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 NHLRC4P0CG21 123 aaPredicted RBP3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 AZU1P20160 251 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 ATP5G3P48201 142 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 BTN1A1Q13410 526 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 PRR9Q5T870 116 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CST9LP1Q5W188 147 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 ZFAND6Q6FIF0 208 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 MORN3Q6PF18 240 aaPredicted RBP3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 PQLC2Q6ZP29 291 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 GOLT1AQ6ZVE7 132 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 Q6ZWC4 215 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 ZNF767PQ75MW2 155 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 SLC51BQ86UW2 128 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 KIR2DL5AQ8N109 375 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 C1orf158Q8N1D5 194 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CSNK1G2-AS1Q8NCQ2 148 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 KIR2DL5BQ8NHK3 375 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 STOML3Q8TAV4 291 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 CMTM2Q8TAZ6 248 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 RNF183Q96D59 192 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 X6R8D5 127 aa3.34□□□□□ -1.87
CHMP4A-202ENST00000524955 FAM74A7A6NL05 159 aa3.33□□□□□ -1.88
CHMP4A-202ENST00000524955 ZNF705EA8MWA4 302 aaPredicted RBP3.33□□□□□ -1.88
CHMP4A-202ENST00000524955 DIRC3C9JPN6 131 aa3.33□□□□□ -1.88
CHMP4A-202ENST00000524955 UBE2CO00762 179 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms