RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CTSEP14091 401 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 RPS27P42677 84 aaKnown RBP4.56□□□□□ -1.68
LSM1-202ENST00000520286 CEBPGP53567 150 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 KRTAP10-7P60409 375 aaPredicted RBP4.56□□□□□ -1.68
LSM1-202ENST00000520286 LCN6P62502 163 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 Q0VG73 95 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FAM53BQ14153 422 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 LINC00483Q53H64 154 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 UNQ5815/PRO19632Q6UWF5 114 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 LYZL2Q7Z4W2 148 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FAM19A1Q7Z5A9 133 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 VN1R4Q7Z5H5 301 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 ZIC4Q8N9L1 334 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 SLAMF6Q96DU3 332 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 ADAT3Q96EY9 351 aaPredicted RBP4.56□□□□□ -1.68
LSM1-202ENST00000520286 ARHGAP5-AS1Q96IT6 56 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 LINC00167Q96N53 147 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 SMIM7Q9BQ49 75 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 VPS25Q9BRG1 176 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 PECRQ9BY49 303 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FAM206AQ9NX38 181 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 BET1LQ9NYM9 111 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 GNG13Q9P2W3 67 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FBN2P35556 2912 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 FLNCQ14315 2725 aa4.56□□□□□ -1.68
LSM1-202ENST00000520286 SNRNP200O75643 2136 aaKnown RBP4.55□□□□□ -1.68
LSM1-202ENST00000520286 IGHV6-1A0A0B4J1U7 121 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 K7ERU9 68 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 SDCBPO00560 298 aaPredicted RBP4.55□□□□□ -1.68
LSM1-202ENST00000520286 LINC00869P0C866 280 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 CCL1P22362 96 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 PEBP1P30086 187 aaKnown RBP4.55□□□□□ -1.68
LSM1-202ENST00000520286 TSPOP30536 169 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 GABRA3P34903 492 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 PSMB2P49721 201 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 DYNLT3P51808 116 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 PIGPP57054 158 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 RUNX1Q01196 453 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 MSMO1Q15800 293 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 ADIRFQ15847 76 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 PLPPR5Q32ZL2 321 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 SMIM21Q3B7S5 101 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 SPATA45Q537H7 98 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 LDLRAD2Q5SZI1 272 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 GLIPR1L1Q6UWM5 242 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 BHLHA15Q7RTS1 189 aaPredicted RBP4.55□□□□□ -1.68
LSM1-202ENST00000520286 RNF133Q8WVZ7 376 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 SPIN2AQ99865 258 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 SPIN2BQ9BPZ2 258 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 TRAPPC1Q9Y5R8 145 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 MPDZO75970 2070 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 KNL1Q8NG31 2342 aa4.55□□□□□ -1.68
LSM1-202ENST00000520286 IGHV3-49A0A0A0MS15 119 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 A0A1W2PRS3 328 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 CEBPZOSA8MTT3 80 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 GYPAP02724 150 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 STATHP02808 62 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 ZNF728P0DKX0 622 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 ZNF93P35789 620 aaPredicted RBP4.54□□□□□ -1.68
LSM1-202ENST00000520286 BTN3A2P78410 334 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 SERF2P84101 59 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 MEF2BQ02080 365 aaPredicted RBP4.54□□□□□ -1.68
LSM1-202ENST00000520286 MARCH3Q86UD3 253 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 ZNF695Q8IW36 515 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 MUC15Q8N387 334 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 C17orf78Q8N4C9 275 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 NECAP1Q8NC96 275 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 OR4P4Q8NGL7 312 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 OR5C1Q8NGR4 320 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 RTN4IP1Q8WWV3 396 aaPredicted RBP4.54□□□□□ -1.68
LSM1-202ENST00000520286 OR5P3Q8WZ94 311 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 HSPB9Q9BQS6 159 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 RPRMQ9NS64 109 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 ANXA10Q9UJ72 324 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 RBM7Q9Y580 266 aaKnown RBP4.54□□□□□ -1.68
LSM1-202ENST00000520286 LRRK2Q5S007 2527 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 NUMA1Q14980 2115 aa4.54□□□□□ -1.68
LSM1-202ENST00000520286 RELNP78509 3460 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 CDIPTO14735 213 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 TAX1BP3O14907 124 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 GPR75O95800 540 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 GPX1P07203 203 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 CTLA4P16410 223 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 CMPK1P30085 196 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 LGALS7P47929 136 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 RHOBP62745 196 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 FMODQ06828 376 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 CST6Q15828 149 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 NMSQ5H8A3 153 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 LRP11Q86VZ4 500 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 TCTEX1D1Q8N7M0 179 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 ZNF709Q8N972 641 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 OR5D18Q8NGL1 313 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 OR5D14Q8NGL3 314 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 STARD4Q96DR4 205 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 TMEM222Q9H0R3 208 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 TXNIPQ9H3M7 391 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 ZNF586Q9NXT0 402 aa4.53□□□□□ -1.68
LSM1-202ENST00000520286 MCTS1Q9ULC4 181 aaKnown RBP4.53□□□□□ -1.68
LSM1-202ENST00000520286 TIMM9Q9Y5J7 89 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms