RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847		Q8N1Y9	231 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ARL6IP6	Q8N6S5	226 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CLUHP3	Q96NS8	147 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SLC25A2	Q9BXI2	301 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SH3BGRL3	Q9H299	93 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	C19orf73	Q9NVV2	129 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TP53TG1	Q9Y2A0	90 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ARL2-SNX15	V9GYD0	113 aa		5.76	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MAP1LC3B2	A6NCE7	125 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MRPS12	O15235	138 aa	Known RBP	5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	IFNA1	P01562	189 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	STAG3L2	P0CL84	134 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	STAG3L3	P0CL85	134 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TAGLN2	P37802	199 aa	Known RBP	5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	PSG3	Q16557	428 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847		Q6ZWC4	215 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	C9orf62	Q8N4C0	152 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	BLNK	Q8WV28	456 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RAB24	Q969Q5	203 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RPUSD4	Q96CM3	377 aa	Known RBP	5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MAP1LC3B	Q9GZQ8	125 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CSTL1	Q9H114	145 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SAV1	Q9H4B6	383 aa	Predicted RBP	5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OTOR	Q9NRC9	128 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CYTL1	Q9NRR1	136 aa		5.75	□□□□□ -1.49
LIMCH1-222	ENST00000515847		F6UZH7	168 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CA1	P00915	261 aa	Predicted RBP	5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ARL14EPL	P0DKL9	152 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	PYY	P10082	97 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	LEP	P41159	167 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TMEM78	Q5T7P6	136 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TRPT1	Q86TN4	253 aa	Known RBP	5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	APRG1	Q8IVJ8	170 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RPP25L	Q8N5L8	163 aa	Known RBP	5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FAM213B	Q8TBF2	198 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TMED6	Q8WW62	240 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FAM167A-AS1	Q96KT0	104 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RCHY1	Q96PM5	261 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ODF3	Q96PU9	254 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	NDFIP1	Q9BT67	221 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	KRTAP9-9	Q9BYP9	154 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	KRTAP9-4	Q9BYQ2	154 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	WFDC10A	Q9H1F0	79 aa		5.74	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TRAV5	A0A0B4J249	113 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847		A0A0J9YX75	114 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847		A0A1B0GVG6	124 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847		A0A1W2PRE2	83 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RBAKDN	A6NC62	111 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847		H3BMM0	161 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	INS	P01308	110 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SLC25A5	P05141	298 aa	Known RBP	5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OR10J4	P0C629	311 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RPL35A	P18077	110 aa	Known RBP	5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	GCHFR	P30047	84 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SULT1A2	P50226	295 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	BLOC1S1	P78537	153 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HIST1H1A	Q02539	215 aa	Predicted RBP	5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MORN5	Q5VZ52	161 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FAM24B	Q8N5W8	94 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	C5orf17	Q8NAS9	161 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OR4B1	Q8NGF8	309 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	OR8A1	Q8NGG7	326 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	FXYD5	Q96DB9	178 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SAT2	Q96F10	170 aa	Predicted RBP	5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TXNDC17	Q9BRA2	123 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847		Q9H3A6	140 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	MANBAL	Q9NQG1	85 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ZNF586	Q9NXT0	402 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	GOLT1B	Q9Y3E0	138 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RFNG	Q9Y644	331 aa		5.73	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TRAV8-2	A0A0B4J237	113 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TRBV7-9	A0A0J9YWB2	115 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TEX48	A0A1B0GUV7	120 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	KNCN	A6PVL3	124 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847		H3BQ15	152 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	BOLA2-SMG1P6	H3BVE0	249 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SLC17A3	O00476	420 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HMGB3	O15347	200 aa	Known RBP	5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	CNN1	P51911	297 aa	Known RBP	5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RAN	P62826	216 aa	Known RBP	5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	ICAM4	Q14773	271 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	HAGH	Q16775	308 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TMEM256	Q8N2U0	113 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RNF182	Q8N6D2	247 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SUN5	Q8TC36	379 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	SFT2D1	Q8WV19	159 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	LINC00477	Q96M19	166 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	C20orf144	Q9BQM9	153 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	TM2D3	Q9BRN9	247 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	LENEP	Q9Y5L5	61 aa		5.72	□□□□□ -1.49
LIMCH1-222	ENST00000515847	RBMY1B	A6NDE4	496 aa	Known RBP	5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RBMY1E	A6NEQ0	496 aa	Known RBP	5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF705E	A8MWA4	302 aa	Predicted RBP	5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SPRY2	O43597	315 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IFNA7	P01567	189 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NMB	P08949	121 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RBMY1D	P0C7P1	496 aa	Known RBP	5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CDKN1B	P46527	198 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	FHIT	P49789	147 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	LINC00322	Q6ZN03	302 aa	Predicted RBP	5.71	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms