RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PFDN1O60925 122 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 IGKV3-20P01619 116 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 AMBPP02760 352 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 C4BPBP20851 252 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 CNN1P51911 297 aaKnown RBP10.42□□□□□ -0.74
NUP54-216ENST00000514901 UBE2L3P68036 154 aaKnown RBP10.42□□□□□ -0.74
NUP54-216ENST00000514901 OR10J6PQ8NGY7 276 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 RAB24Q969Q5 203 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 ZNF503Q96F45 646 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 RARRES2Q99969 163 aa10.42□□□□□ -0.74
NUP54-216ENST00000514901 ZNF471Q9BX82 626 aaPredicted RBP10.42□□□□□ -0.74
NUP54-216ENST00000514901 ZNF705FA8MVS1 300 aaPredicted RBP10.41□□□□□ -0.74
NUP54-216ENST00000514901 STAG3L2P0CL84 134 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 STAG3L3P0CL85 134 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 HIST1H1AQ02539 215 aaPredicted RBP10.41□□□□□ -0.74
NUP54-216ENST00000514901 CSNK1G2-AS1Q8NCQ2 148 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 OR11H2Q8NH07 326 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 PPP1R14DQ9NXH3 145 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 XCL2Q9UBD3 114 aa10.41□□□□□ -0.74
NUP54-216ENST00000514901 CXorf1O96002 111 aa10.4□□□□□ -0.74
NUP54-216ENST00000514901 SEC11BP0C7V7 166 aa10.4□□□□□ -0.74
NUP54-216ENST00000514901 ICAM4Q14773 271 aa10.4□□□□□ -0.74
NUP54-216ENST00000514901 LGALSLQ3ZCW2 172 aaPredicted RBP10.4□□□□□ -0.74
NUP54-216ENST00000514901 AMTNQ6UX39 209 aa10.4□□□□□ -0.74
NUP54-216ENST00000514901 EDA2RQ9HAV5 297 aa10.4□□□□□ -0.74
NUP54-216ENST00000514901 DNAH7Q8WXX0 4024 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 CTXND1A0A1B0GTU2 59 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 UMAD1C9J7I0 102 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 ZNF705DP0CH99 300 aaPredicted RBP10.39□□□□□ -0.75
NUP54-216ENST00000514901 ZNF705BP0CI00 300 aaPredicted RBP10.39□□□□□ -0.75
NUP54-216ENST00000514901 TPT1P13693 172 aaKnown RBP10.39□□□□□ -0.75
NUP54-216ENST00000514901 CSN1S1P47710 185 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 RANP62826 216 aaKnown RBP10.39□□□□□ -0.75
NUP54-216ENST00000514901 FAM74A1Q5RGS3 127 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 BAP18Q8IXM2 172 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 EXOC3-AS1Q8N2X6 119 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 RXFP4Q8TDU9 374 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 SLC35B3Q9H1N7 401 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 TMEM167BQ9NRX6 74 aa10.39□□□□□ -0.75
NUP54-216ENST00000514901 A0A1B0GVG6 124 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 ZNF705EA8MWA4 302 aaPredicted RBP10.38□□□□□ -0.75
NUP54-216ENST00000514901 PRAC2D3DTV9 90 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 BOLA2-SMG1P6H3BVE0 249 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 M0R3E3 92 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 HMGB3O15347 200 aaKnown RBP10.38□□□□□ -0.75
NUP54-216ENST00000514901 ARL14EPLP0DKL9 152 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 TSPOP30536 169 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 FXYD7P58549 80 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 EIF5AL1Q6IS14 154 aaKnown RBP10.38□□□□□ -0.75
NUP54-216ENST00000514901 ARL6IP6Q8N6S5 226 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 IL17DQ8TAD2 202 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 STOML3Q8TAV4 291 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 SUN5Q8TC36 379 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 PHYHIPLQ96FC7 376 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 LINC00477Q96M19 166 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 ODF3Q96PU9 254 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 Q9H3A6 140 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 OTORQ9NRC9 128 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 GOLT1BQ9Y3E0 138 aa10.38□□□□□ -0.75
NUP54-216ENST00000514901 SMIM9A6NGZ8 99 aa10.37□□□□□ -0.75
NUP54-216ENST00000514901 EIF3GO75821 320 aaKnown RBP eCLIP10.37□□□□□ -0.75
NUP54-216ENST00000514901 MIFP14174 115 aa10.37□□□□□ -0.75
NUP54-216ENST00000514901 GCHFRP30047 84 aa10.37□□□□□ -0.75
NUP54-216ENST00000514901 ZFP69Q49AA0 526 aa10.37□□□□□ -0.75
NUP54-216ENST00000514901 IGF2BP2-AS1Q96M15 143 aa10.37□□□□□ -0.75
NUP54-216ENST00000514901 NPIPB6E9PJ23 425 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 CDKN1BP46527 198 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 SPINK13Q1W4C9 94 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 DPPA3Q6W0C5 159 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 ZNF705AQ6ZN79 300 aaPredicted RBP10.36□□□□□ -0.75
NUP54-216ENST00000514901 SLC51BQ86UW2 128 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 CMTM2Q8TAZ6 248 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 NEU1Q99519 415 aa10.36□□□□□ -0.75
NUP54-216ENST00000514901 RBAKDNA6NC62 111 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 PGPA6NDG6 321 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 INSP01308 110 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 SLC25A5P05141 298 aaKnown RBP10.35□□□□□ -0.75
NUP54-216ENST00000514901 LEPP41159 167 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 ZNF726P1Q15940 193 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 C9orf47Q6ZRZ4 202 aa10.35□□□□□ -0.75
NUP54-216ENST00000514901 C11orf68Q9H3H3 251 aaKnown RBP10.35□□□□□ -0.75
NUP54-216ENST00000514901 A0A0J9YWU9 116 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 C3orf84H3BNL1 204 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 M0R2Z0 102 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 CRXO43186 299 aaPredicted RBP10.34□□□□□ -0.75
NUP54-216ENST00000514901 CT45A10P0DMU9 189 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 RAB5CP51148 216 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 CD300CQ08708 224 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 TMEM78Q5T7P6 136 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 SSX7Q7RTT5 188 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 TMEM256Q8N2U0 113 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 MUC7Q8TAX7 377 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 C20orf144Q9BQM9 153 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 AGPAT4-IT1Q9H0P7 198 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 X6R8D5 127 aa10.34□□□□□ -0.75
NUP54-216ENST00000514901 TRBV7-9A0A0J9YWB2 115 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 A0A1W2PRE2 83 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 MAP1LC3B2A6NCE7 125 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 DIRC3C9JPN6 131 aa10.33□□□□□ -0.76
NUP54-216ENST00000514901 NMBP08949 121 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms