RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 CST9LQ9H4G1 147 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 MYMXA0A1B0GTQ4 84 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 PRSS46E5RG02 174 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 RUSC1-AS1Q66K80 236 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 DEFB104AQ8WTQ1 72 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 RNF114Q9Y508 228 aa13.28□□□□□ -0.28
PCDHA1-203ENST00000504120 ZNF503-AS2A6NEH8 195 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 NPC2P61916 151 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 RSPO1Q2MKA7 263 aaPredicted RBP13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 IGHV2-70DA0A0C4DH43 119 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 DLEU1O43261 78 aa13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 NUP210Q8TEM1 1887 aaPredicted RBP13.27□□□□□ -0.29
PCDHA1-203ENST00000504120 DEFB131AP59861 70 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF664Q8N3J9 261 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 TIMM21Q9BVV7 248 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C15orf65H3BRN8 121 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 PLA2G2CQ5R387 149 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C6orf226Q5I0X4 101 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 C11orf68Q9H3H3 251 aaKnown RBP13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 IGLV3-9A0A075B6K5 115 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 GATD1Q8NB37 220 aa13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 NAA38Q9BRA0 125 aaKnown RBP13.26□□□□□ -0.29
PCDHA1-203ENST00000504120 DLX4Q92988 240 aaPredicted RBP13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 IGLV3-1P01715 115 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 FAM104BQ5XKR9 115 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 C18orf32Q8TCD1 76 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM14CQ9P0S9 112 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 RHODO00212 210 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 SSC4DQ8WTU2 575 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 ANAPC13Q9BS18 74 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF726P1Q15940 193 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 FAM231DQ6ZW35 169 aa13.25□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM213A2RRL7 107 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 RIPPLY3P57055 190 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 KIR3DS1Q14943 382 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 OVOL2Q9BRP0 275 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 ESDP10768 282 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 DUX4L9Q6RFH8 374 aaPredicted RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 CHAC1Q9BUX1 264 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 NOTCH4Q99466 2003 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 RNF223E7ERA6 249 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 SP5Q6BEB4 398 aaPredicted RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 C8orf49Q96NF6 230 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 PHF3Q92576 2039 aaKnown RBP13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 LEPROTO15243 131 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 ZNF124Q15973 351 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 CYYR1Q96J86 154 aa13.24□□□□□ -0.29
PCDHA1-203ENST00000504120 TRAV13-1A0A0B4J241 112 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 CD5LO43866 347 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 LGALS1P09382 135 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 RIF1Q5UIP0 2472 aaKnown RBP13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 DKK1O94907 266 aa13.23□□□□□ -0.29
PCDHA1-203ENST00000504120 H3BRN7 92 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 WT1-ASQ06250 92 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 UBE2DNLQ8IWF7 75 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 LINC01619G3V211 115 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 G3V318 75 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 SS18Q15532 418 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 PRIMA1Q86XR5 153 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 SPXQ9BT56 116 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 NDUFA4O00483 81 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 Q8N8P6 123 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 TMEM141Q96I45 108 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 MYO7BQ6PIF6 2116 aa13.22□□□□□ -0.29
PCDHA1-203ENST00000504120 C2orf82Q6UX34 121 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 MCRIP2Q9BUT9 160 aaKnown RBP13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 C20orf144Q9BQM9 153 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 GPR179Q6PRD1 2367 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 HEATR1Q9H583 2144 aaKnown RBP13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 UBE2V1Q13404 147 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 C8orf86Q6ZUL3 223 aa13.21□□□□□ -0.29
PCDHA1-203ENST00000504120 ROS1P08922 2347 aa13.21□□□□□ -0.3
PCDHA1-203ENST00000504120 FAM215AQ9Y5M1 114 aa13.21□□□□□ -0.3
PCDHA1-203ENST00000504120 ZNF134P52741 427 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2BQ13066 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2EQ4V326 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 KIAA2026Q5HYC2 2103 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 PRR25Q96S07 402 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 GAGE2DQ9UEU5 116 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 V9GYV3 84 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 Q5PR19 223 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 KAAG1Q9UBP8 84 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 TP53TG1Q9Y2A0 90 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 C10orf91Q5T1B1 145 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 NEGR1Q7Z3B1 354 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 THAP8Q8NA92 274 aa13.2□□□□□ -0.3
PCDHA1-203ENST00000504120 C2orf66Q6UXQ4 117 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 A8MWP6 167 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DEFB130BP0DP73 79 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DEFB130AP0DP74 79 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 POU2AF1Q16633 256 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 STPG4Q8N801 248 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 POLR3KQ9Y2Y1 108 aaPredicted RBP13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 SMIM27A0A1W2PRY6 76 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 SPINK13Q1W4C9 94 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 DOCK8Q8NF50 2099 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 J3QLI3 93 aa13.19□□□□□ -0.3
PCDHA1-203ENST00000504120 HAPLN4Q86UW8 402 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 LAMTOR3Q9UHA4 124 aa13.18□□□□□ -0.3
PCDHA1-203ENST00000504120 FANCMQ8IYD8 2048 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms