RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HRH1P35367 487 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 P2RY1P47900 373 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 INPP1P49441 399 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 CCL18P55774 89 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 TAS2R19P59542 299 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 SPCS3P61009 180 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 MRPS10P82664 201 aaKnown RBP2.71□□□□□ -1.98
USP54-217ENST00000498213 SSBP1Q04837 148 aaKnown RBP2.71□□□□□ -1.98
USP54-217ENST00000498213 C12orf74Q32Q52 190 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 STEAP1BQ6NZ63 245 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 ZNF493Q6ZR52 646 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 ZNF818PQ6ZRF7 136 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 Q6ZRP5 223 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 APRG1Q8IVJ8 170 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 SLC35G3Q8N808 338 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 CCDC71LQ8N9Z2 235 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 TMEM229BQ8NBD8 167 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 UBAC2Q8NBM4 344 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 OR51S1Q8NGJ8 323 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 OR4D5Q8NGN0 318 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 OR5H2Q8NGV7 314 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 ENKURQ8TC29 256 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 IL22RA2Q969J5 263 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 SEC22AQ96IW7 307 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 RAB40CQ96S21 281 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 C20orf144Q9BQM9 153 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 C7orf50Q9BRJ6 194 aaKnown RBP2.71□□□□□ -1.98
USP54-217ENST00000498213 SEC22CQ9BRL7 303 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 NIPSNAP3BQ9BS92 247 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 MARVELD1Q9BSK0 173 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 UPK3BQ9BT76 320 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 C20orf85Q9H1P6 137 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 IFT46Q9NQC8 304 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 NUDT15Q9NV35 164 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 CLEC5AQ9NY25 188 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 UBQLN2Q9UHD9 624 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 SELENOKQ9Y6D0 94 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 U3KQ87 197 aa2.71□□□□□ -1.98
USP54-217ENST00000498213 NAP1L6A6NFF2 107 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 A8MTW9 85 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 INMT-MINDY4F8WBC2 141 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 H3BMM0 161 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 SOCS3O14543 225 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 DUSP14O95147 198 aaKnown RBP2.7□□□□□ -1.98
USP54-217ENST00000498213 RAB3DO95716 219 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 IGHV3-23P01764 117 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 AKAIN1P0CW23 69 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 LPAR6P43657 344 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 KRTAP10-1P60331 282 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 UBE2MP61081 183 aaKnown RBP2.7□□□□□ -1.98
USP54-217ENST00000498213 POLR2GP62487 172 aaKnown RBP eCLIP2.7□□□□□ -1.98
USP54-217ENST00000498213 SRPXP78539 464 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 DEFA5Q01523 94 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 ZNF415Q09FC8 603 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 RRN3P1Q2M238 152 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 C2orf83Q53S99 150 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 OR2B11Q5JQS5 317 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 ACTL10Q5JWF8 245 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 EBLN2Q6P2I7 272 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 LHFPL1Q86WI0 220 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 C6orf223Q8N319 242 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 Q8NBF4 154 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 OR10W1Q8NGF6 305 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 OR10J6PQ8NGY7 276 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 DEFB104AQ8WTQ1 72 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 DEDD2Q8WXF8 326 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 TMEM230Q96A57 120 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 SCGB3A2Q96PL1 93 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 ZNF2Q9BSG1 426 aaPredicted RBP2.7□□□□□ -1.98
USP54-217ENST00000498213 SCRT1Q9BWW7 348 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 FXYD6Q9H0Q3 95 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 SAV1Q9H4B6 383 aaPredicted RBP2.7□□□□□ -1.98
USP54-217ENST00000498213 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.7□□□□□ -1.98
USP54-217ENST00000498213 MCUBQ9NWR8 336 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 EHFQ9NZC4 300 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 RABAC1Q9UI14 185 aa2.7□□□□□ -1.98
USP54-217ENST00000498213 TNXBP22105 4242 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 NBDYA0A0U1RRE5 68 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 DUXBA0A1W2PPF3 345 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 SNRPGP15A8MWD9 76 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 G3V3Q6 166 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 SMLR1H3BR10 107 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 TNFSF12O43508 249 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 PFDN1O60925 122 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 OXTP01178 125 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 IGKV1-17P01599 117 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 RLN1P04808 185 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 P0C879 139 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 IGLC1P0CG04 106 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 RD3LP0DJH9 198 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 CXCL3P19876 107 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 G6PCP35575 357 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 GPX4P36969 197 aaPredicted RBP2.69□□□□□ -1.98
USP54-217ENST00000498213 OPRK1P41145 380 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 AKR1C2P52895 323 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 NKX2-5P52952 324 aaPredicted RBP2.69□□□□□ -1.98
USP54-217ENST00000498213 AP3S2P59780 193 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 TSPAN5P62079 268 aa2.69□□□□□ -1.98
USP54-217ENST00000498213 SUPT4H1P63272 117 aaKnown RBP2.69□□□□□ -1.98
USP54-217ENST00000498213 DLK1P80370 383 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms