RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 SPATA25Q9BR10 227 aa12.6□□□□□ -0.39
HDAC6-235ENST00000495515 TMEM167BQ9NRX6 74 aa12.6□□□□□ -0.39
HDAC6-235ENST00000495515 RAB5CP51148 216 aa12.59□□□□□ -0.39
HDAC6-235ENST00000495515 FAM74A1Q5RGS3 127 aa12.59□□□□□ -0.39
HDAC6-235ENST00000495515 OR8A1Q8NGG7 326 aa12.59□□□□□ -0.39
HDAC6-235ENST00000495515 TM2D3Q9BRN9 247 aa12.59□□□□□ -0.39
HDAC6-235ENST00000495515 F6UB75 175 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 GCHFRP30047 84 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 CSN1S1P47710 185 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 NKX2-5P52952 324 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-235ENST00000495515 DEFB1P60022 68 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 RANP62826 216 aaKnown RBP12.58□□□□□ -0.4
HDAC6-235ENST00000495515 ICAM4Q14773 271 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 GDF5OSQ5U4N7 250 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 Q6ZWC4 215 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 IQCF2Q8IXL9 164 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 EXOC3-AS1Q8N2X6 119 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 OR10J6PQ8NGY7 276 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 PHYHIPLQ96FC7 376 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 C1QTNF4Q9BXJ3 329 aa12.58□□□□□ -0.4
HDAC6-235ENST00000495515 MAP1LC3B2A6NCE7 125 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 CA1P00915 261 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-235ENST00000495515 HIST1H1AQ02539 215 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-235ENST00000495515 ZNF726P1Q15940 193 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 FAM213BQ8TBF2 198 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 MAP1LC3BQ9GZQ8 125 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 Q9H3A6 140 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 PPP1R14DQ9NXH3 145 aa12.57□□□□□ -0.4
HDAC6-235ENST00000495515 ZNF705FA8MVS1 300 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-235ENST00000495515 IGKV3-20P01619 116 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 CNN1P51911 297 aaKnown RBP12.56□□□□□ -0.4
HDAC6-235ENST00000495515 SSX7Q7RTT5 188 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 SUN5Q8TC36 379 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 RXFP4Q8TDU9 374 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 OTORQ9NRC9 128 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 TP53TG1Q9Y2A0 90 aa12.56□□□□□ -0.4
HDAC6-235ENST00000495515 M0R3E3 92 aa12.55□□□□□ -0.4
HDAC6-235ENST00000495515 CMTM2Q8TAZ6 248 aa12.55□□□□□ -0.4
HDAC6-235ENST00000495515 RCHY1Q96PM5 261 aa12.55□□□□□ -0.4
HDAC6-235ENST00000495515 PGPA6NDG6 321 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 A8MTW9 85 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 TEX46H3BTG2 121 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 AMBPP02760 352 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 H2AFB1P0C5Y9 115 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 ZNF705DP0CH99 300 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-235ENST00000495515 ZNF705BP0CI00 300 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-235ENST00000495515 FHITP49789 147 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 DEFB135Q30KP9 77 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 SFT2D1Q8WV19 159 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 MBD3L1Q8WWY6 194 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 PLA2G2EQ9NZK7 142 aa12.54□□□□□ -0.4
HDAC6-235ENST00000495515 PRAC2D3DTV9 90 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 SPRY2O43597 315 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 SULT1A2P50226 295 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 FGF8P55075 233 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-235ENST00000495515 ARL6IP6Q8N6S5 226 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 RNF183Q96D59 192 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 U3KQK5 164 aa12.53□□□□□ -0.4
HDAC6-235ENST00000495515 A0A1W2PRE2 83 aa12.52□□□□□ -0.41
HDAC6-235ENST00000495515 LINC00477Q96M19 166 aa12.52□□□□□ -0.41
HDAC6-235ENST00000495515 NKX6-2Q9C056 277 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-235ENST00000495515 NPIPB6E9PJ23 425 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 BOLA2-SMG1P6H3BVE0 249 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 TSPOP30536 169 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 AMTNQ6UX39 209 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 OVOL2Q9BRP0 275 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 SLC35B3Q9H1N7 401 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 TMPRSS5Q9H3S3 457 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 XCL2Q9UBD3 114 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 BOLA1Q9Y3E2 137 aa12.51□□□□□ -0.41
HDAC6-235ENST00000495515 RBAKDNA6NC62 111 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 HBE1P02100 147 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 SLC25A5P05141 298 aaKnown RBP12.5□□□□□ -0.41
HDAC6-235ENST00000495515 GIG44P09565 113 aaPredicted RBP12.5□□□□□ -0.41
HDAC6-235ENST00000495515 PPT1P50897 306 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 TMEM78Q5T7P6 136 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 C5orf17Q8NAS9 161 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 ODF3Q96PU9 254 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 RETNQ9HD89 108 aa12.5□□□□□ -0.41
HDAC6-235ENST00000495515 SERTM2A0A1B0GWG4 89 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 DIRC3C9JPN6 131 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 K7EQM0 130 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 PRB4P10163 310 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-235ENST00000495515 FXYD7P58549 80 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 SUMO1P63165 101 aaKnown RBP12.49□□□□□ -0.41
HDAC6-235ENST00000495515 C9orf47Q6ZRZ4 202 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 ARL2-SNX15V9GYD0 113 aa12.49□□□□□ -0.41
HDAC6-235ENST00000495515 IGKV2-40A0A087WW87 121 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-235ENST00000495515 TRAV1-1A0A0B4J248 108 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 ZNF705EA8MWA4 302 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-235ENST00000495515 INSP01308 110 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 IGKV2D-40P01614 121 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-235ENST00000495515 LEPP41159 167 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 CDKN1BP46527 198 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 UBE2G2P60604 165 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 SPINK13Q1W4C9 94 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 ALKAL2Q6UX46 152 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 IGF2BP2-AS1Q96M15 143 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 RARRES2Q99969 163 aa12.48□□□□□ -0.41
HDAC6-235ENST00000495515 AGPAT4-IT1Q9H0P7 198 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms