RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 Q86TA4 180 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 PIFOQ8TCI5 191 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 NDUFA4O00483 81 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 CCL18P55774 89 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 C8orf86Q6ZUL3 223 aa10.55□□□□□ -0.72
COL6A3-212ENST00000491769 CHAC1Q9BUX1 264 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 hDV102S1A0JD36 115 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 DEFB136Q30KP8 78 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 NMSQ5H8A3 153 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 HS3ST6Q96QI5 342 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 IGHV4-59P01825 116 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 HLA-DRB4P13762 266 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 CACNA1EQ15878 2313 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 HLA-DRB4X5D2U9 266 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 H0YIZ8 118 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 CRLF1O75462 422 aa10.54□□□□□ -0.72
COL6A3-212ENST00000491769 PNRC2Q9NPJ4 139 aaKnown RBP10.54□□□□□ -0.72
COL6A3-212ENST00000491769 NRXN2Q9P2S2 1712 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 SOCS3O14543 225 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 IFITM2Q01629 132 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 MRPL27Q9P0M9 148 aaKnown RBP10.53□□□□□ -0.72
COL6A3-212ENST00000491769 DOCK4Q8N1I0 1966 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 F8W735 103 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-212ENST00000491769 PCP4P48539 62 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 GAGE2BQ13066 116 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 ELANEP08246 267 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 XCL1P47992 114 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 KLHDC3Q9BQ90 382 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 VPREB3Q9UKI3 123 aa10.53□□□□□ -0.72
COL6A3-212ENST00000491769 SLAQ13239 276 aa10.52□□□□□ -0.72
COL6A3-212ENST00000491769 C1orf43Q9BWL3 253 aa10.52□□□□□ -0.72
COL6A3-212ENST00000491769 PFN1P07737 140 aaKnown RBP10.52□□□□□ -0.72
COL6A3-212ENST00000491769 GP9P14770 177 aa10.52□□□□□ -0.72
COL6A3-212ENST00000491769 MYO7BQ6PIF6 2116 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 TEX36Q5VZQ5 186 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 TIMM17AQ99595 171 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 COL6A6A6NMZ7 2263 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 SCN5AQ14524 2016 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 NBL1P41271 181 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 ZNF581Q9P0T4 197 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 PKIGQ9Y2B9 76 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 PTPRFP10586 1907 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 ZC2HC1BQ5TFG8 222 aa10.52□□□□□ -0.73
COL6A3-212ENST00000491769 DUX4L9Q6RFH8 374 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-212ENST00000491769 TMEM213A2RRL7 107 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 TIRAPP58753 221 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 HAMPP81172 84 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 PDE6HQ13956 83 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGFL3Q6UXB1 125 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 ZNF503Q96F45 646 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 TCF20Q9UGU0 1960 aaKnown RBP10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV1-24A0A0C4DH33 117 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 LINC00518Q8N0U6 118 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 TRAV26-2A0A0B4J265 109 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 NEGR1Q7Z3B1 354 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 SIGMAR1Q99720 223 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 LY6G6FQ5SQ64 297 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 C15orf62A8K5M9 175 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV3-30P01768 117 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV3-33P01772 117 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV3-30-3P0DP02 117 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV3-30-5P0DP03 117 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 CSRP3P50461 194 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 ZFAND6Q6FIF0 208 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 GSN-AS1Q9NRJ2 163 aa10.51□□□□□ -0.73
COL6A3-212ENST00000491769 ALPK2Q86TB3 2170 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 C4orf48Q5BLP8 95 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 DSCR8Q96T75 97 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 GFI1Q99684 422 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 KLK5Q9Y337 293 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-212ENST00000491769 FER1L5A0AVI2 2057 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 SDK2Q58EX2 2172 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV7-4-1A0A0J9YVY3 117 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 C9JAW5 83 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 INAFM2P0DMQ5 153 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 RNASE13Q5GAN3 156 aaKnown RBP10.5□□□□□ -0.73
COL6A3-212ENST00000491769 TMEM14EPQ6UXP3 125 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 TMEM75Q8N9X5 138 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 LINC00479Q96M42 142 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 IGHV4-4A0A075B6R2 117 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 TMEM141Q96I45 108 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 A0A087X0K7 114 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 RHOHQ15669 191 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 TRPM7Q96QT4 1865 aa10.5□□□□□ -0.73
COL6A3-212ENST00000491769 BUB3O43684 328 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 YPEL3P61236 119 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-212ENST00000491769 ARFGEF3Q5TH69 2177 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 SDHAF1A6NFY7 115 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 NDUFS7O75251 213 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 CLPSL1A2RUU4 121 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 Q8TCH9 128 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 RNF144BQ7Z419 303 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 LINC01551Q86U37 167 aa10.49□□□□□ -0.73
COL6A3-212ENST00000491769 TRAV12-1A0A0B4J245 112 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 APRG1Q8IVJ8 170 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 C2orf66Q6UXQ4 117 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 CRIPAKQ8N1N5 446 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 FANCMQ8IYD8 2048 aa10.48□□□□□ -0.73
COL6A3-212ENST00000491769 YLPM1P49750 1951 aaKnown RBP10.48□□□□□ -0.73
COL6A3-212ENST00000491769 TRBV6-6A0A0A6YYG2 114 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms