RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247		H3BUX3	64 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247		J3KRW8	73 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247		J3QKU1	62 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	BMPR1B	O00238	502 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	PRY	O14603	147 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	BUB3	O43684	328 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGLV2-11	P01706	119 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRGC2	P03986	189 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	S100A8	P05109	93 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	SLC25A5	P05141	298 aa	Known RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	PCP4	P48539	62 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	RAN	P62826	216 aa	Known RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	PSG9	Q00887	426 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	REL	Q04864	619 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	ATP5G2	Q06055	141 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	ECSCR	Q19T08	205 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q5PR19	223 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	RASL11A	Q6T310	242 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	TOMM20L	Q6UXN7	152 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM219	Q86XT9	240 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	BAGE2	Q86Y30	109 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM183A	Q8IXX5	376 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	TEX29	Q8N6K0	151 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	WIPF2	Q8TF74	440 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	C17orf77	Q96MU5	243 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	KLK15	Q9H2R5	256 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	RABAC1	Q9UI14	185 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZFP30	Q9Y2G7	519 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	USP9Y	O00507	2555 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	PLXNB1	O43157	2135 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	VPS13C	Q709C8	3753 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247		A0A1W2PPQ1	181 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	OR2T8	A6NH00	312 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGHG4	P01861	327 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	MT-ND6	P03923	174 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	CLEC3B	P05452	202 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	S100A6	P06703	90 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRGC1	P0CF51	173 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	GPR183	P32249	361 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	IER3	P46695	156 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	CDX1	P47902	265 aa	Predicted RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	ERVFC1-1	P60608	527 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	UBE2G1	P62253	170 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	SNRPE	P62304	92 aa	Known RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	RPL19	P84098	196 aa	Known RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	OR5I1	Q13606	314 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	RPEL1	Q2QD12	228 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	DEFB112	Q30KQ8	113 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	SMUG1	Q53HV7	270 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	IBA57	Q5T440	356 aa	Known RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	LEMD1	Q68G75	181 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q86TA4	180 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZNF575	Q86XF7	245 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	LINC00518	Q8N0U6	118 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZFP82	Q8N141	532 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q8N2B8	174 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM86B	Q8N661	226 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	OR4B1	Q8NGF8	309 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	MYOZ3	Q8TDC0	251 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	BLNK	Q8WV28	456 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	FRZB	Q92765	325 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	MRPL53	Q96EL3	112 aa	Known RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	GRAMD2B	Q96HH9	432 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	LINC00479	Q96M42	142 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	GNB1L	Q9BYB4	327 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	GFRA4	Q9GZZ7	299 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	SAV1	Q9H4B6	383 aa	Predicted RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	CLEC5A	Q9NY25	188 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	SOX21	Q9Y651	276 aa	Predicted RBP	4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	SMAD5-AS1	Q9Y6J3	95 aa		4.25	□□□□□ -1.73
ATG4A-208	ENST00000489247	ANK3	Q12955	4377 aa	Known RBP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	TRAV34	A0A0B4J273	112 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247		A0A0G2JLM5	398 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	RBAKDN	A6NC62	111 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	SH2D7	A6NKC9	451 aa	Predicted RBP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	SLC17A3	O00476	420 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	NDUFA4	O00483	81 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	TGFA	P01135	160 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	SMIM6	P0DI80	62 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	PSMB8	P28062	276 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	FOXA3	P55318	350 aa	Predicted RBP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	BLCAP	P62952	87 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	GNG5	P63218	68 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	FABP9	Q0Z7S8	132 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	PSG3	Q16557	428 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	DNLZ	Q5SXM8	178 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	CYB5R2	Q6BCY4	276 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	ATP5L2	Q7Z4Y8	100 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	CMTM2	Q8TAZ6	248 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	TSKU	Q8WUA8	353 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	SLC50A1	Q9BRV3	221 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	RNASE7	Q9H1E1	156 aa	Known RBP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	AAMDC	Q9H7C9	122 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZNF331	Q9NQX6	463 aa	Predicted RBP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	PPP1R14D	Q9NXH3	145 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	VPREB3	Q9UKI3	123 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247		S4R3C0	116 aa		4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
ATG4A-208	ENST00000489247	CREBBP	Q92793	2442 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms