RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 TNFSF8P32971 234 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 LSM3P62310 102 aaKnown RBP6.14□□□□□ -1.43
COL17A1-207ENST00000488320 RPP30P78346 268 aaKnown RBP6.14□□□□□ -1.43
COL17A1-207ENST00000488320 LINC01620Q4KN68 170 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 LCN15Q6UWW0 184 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 CYP2G1PQ6ZSU1 146 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 LYZL2Q7Z4W2 148 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 C11orf72Q8NBR9 251 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 OR4D10Q8NGI6 311 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 OR52I2Q8NH67 350 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 TXNDC17Q9BRA2 123 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 SLC50A1Q9BRV3 221 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 ZNF331Q9NQX6 463 aaPredicted RBP6.14□□□□□ -1.43
COL17A1-207ENST00000488320 RBFOX3A6NFN3 312 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 FAM25AB3EWG3 89 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 FAM25CB3EWG5 89 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 FAM25GB3EWG6 89 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 ORM1P02763 201 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 SLC25A5P05141 298 aaKnown RBP6.13□□□□□ -1.43
COL17A1-207ENST00000488320 CXCL2P19875 107 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TCL1AP56279 114 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TAS2R19P59542 299 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 RPL37AP61513 92 aaKnown RBP6.13□□□□□ -1.43
COL17A1-207ENST00000488320 ASAH1Q13510 395 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TDRG1Q3Y452 100 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 ANXA2RQ3ZCQ2 193 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TEPPQ6URK8 271 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TMEM229BQ8NBD8 167 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 CIRBP-AS1Q8TBR5 109 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 BLNKQ8WV28 456 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 VGLL1Q99990 258 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 ARL6Q9H0F7 186 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 VCX3BQ9H321 246 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 RNF24Q9Y225 148 aa6.13□□□□□ -1.43
COL17A1-207ENST00000488320 TRAV8-6A0A0B4J262 113 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 A0A0B4J2A0 478 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 LINC00854A0A1B0GVQ3 168 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 C7orf71A4D174 169 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 DISC1C4P0D8 188 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 H3BTX0 84 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 RGS13O14921 159 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 HPGDSO60760 199 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 MPDU1O75352 247 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 MED6O75586 246 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 IGHV3-30P01768 117 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 IGHV3-33P01772 117 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 LINC00869P0C866 280 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 IGHV3-30-3P0DP02 117 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 IGHV3-30-5P0DP03 117 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 RNASE4P34096 147 aaKnown RBP6.12□□□□□ -1.43
COL17A1-207ENST00000488320 PPT1P50897 306 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 WFDC2Q14508 124 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 NEDD8Q15843 81 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 OR10J3Q5JRS4 329 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 MORN5Q5VZ52 161 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 IZUMO2Q6UXV1 221 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 ARPC5LQ9BPX5 153 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 SLC25A31Q9H0C2 315 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 MTFP1Q9UDX5 166 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 SHPKQ9UHJ6 478 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 GPR132Q9UNW8 380 aa6.12□□□□□ -1.43
COL17A1-207ENST00000488320 C9JCJ5 164 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 WRBO00258 174 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 SFTA3P0C7M3 94 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 BTN1A1Q13410 526 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 SURF2Q15527 256 aaPredicted RBP6.11□□□□□ -1.43
COL17A1-207ENST00000488320 LINC01556Q5JQF7 62 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 SPANXN5Q5MJ07 72 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 IBA57Q5T440 356 aaKnown RBP6.11□□□□□ -1.43
COL17A1-207ENST00000488320 FAAP20Q6NZ36 180 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 ACOT7LQ6ZUV0 252 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 NHLRC2Q8NBF2 726 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 ODF3Q96PU9 254 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 CIB3Q96Q77 187 aaPredicted RBP6.11□□□□□ -1.43
COL17A1-207ENST00000488320 ARV1Q9H2C2 271 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 TP53TG3Q9ULZ0 132 aa6.11□□□□□ -1.43
COL17A1-207ENST00000488320 TNXBP22105 4242 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 MRPS12O15235 138 aaKnown RBP6.1□□□□□ -1.43
COL17A1-207ENST00000488320 GPX1P07203 203 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 MT1HL1P0DM35 61 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 ANXA3P12429 323 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 PLP1P60201 277 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 SELENOTP62341 195 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 CD300CQ08708 224 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 SH2D6Q7Z4S9 175 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 BPIFA4PQ86YQ2 179 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 IQCF2Q8IXL9 164 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 TMEM37Q8WXS4 190 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 DAZAP1Q96EP5 407 aaKnown RBP6.1□□□□□ -1.43
COL17A1-207ENST00000488320 ZNF479Q96JC4 524 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 RAB26Q9ULW5 256 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 PXMP4Q9Y6I8 212 aa6.1□□□□□ -1.43
COL17A1-207ENST00000488320 IGHV1OR15-1A0A075B7D0 117 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 PRSS46E5RG02 174 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 CCNKO75909 580 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 HNRNPA3P51991 378 aaKnown RBP6.09□□□□□ -1.43
COL17A1-207ENST00000488320 ERCC8Q13216 396 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 PATE2Q6UY27 113 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 LINC00305Q7Z4B0 112 aa6.09□□□□□ -1.43
COL17A1-207ENST00000488320 OR51S1Q8NGJ8 323 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms