RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 K7EQS6 105 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HMGB3O15347 200 aaKnown RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 PLA2G10O15496 165 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 FABP7O15540 132 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TPST1O60507 370 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PITX3O75364 302 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 OR7C1O76099 320 aaPredicted RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 EPPINO95925 133 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TTRP02766 147 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 MT-ND4LP03901 98 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 MT-ATP8P03928 68 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CD2P06729 351 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CXCL1P09341 107 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 OR5G3P0C626 314 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 IGLC6P0CF74 106 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 ATF1P18846 271 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 ORM2P19652 201 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CXCL3P19876 107 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CCL1P22362 96 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SULT1A1P50225 295 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SULT1A2P50226 295 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 AKR1C2P52895 323 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TPI1P60174 286 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 S100A10P60903 97 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HSPE1P61604 102 aaKnown RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 GNG5P63218 68 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SELENOWP63302 87 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SLC35A2P78381 396 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PSG9Q00887 426 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 DEFA5Q01523 94 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PEA15Q15121 130 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HLA-DRB5Q30154 266 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 ACOT6Q3I5F7 207 aaPredicted RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 SPRNQ5BIV9 151 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 C1orf195Q5TG92 126 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 GLT8D1Q68CQ7 371 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 OR10K2Q6IF99 312 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TMEM14EPQ6UXP3 125 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 RASSF6Q6ZTQ3 369 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SVBPQ8N300 66 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TSTD1Q8NFU3 115 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TERB2Q8NHR7 220 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 ZNF431Q8TF32 576 aaPredicted RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 RAB2BQ8WUD1 216 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 KLK6Q92876 244 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TSLPQ969D9 159 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PPCDCQ96CD2 204 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 IMP4Q96G21 291 aaKnown RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 BTF3L4Q96K17 158 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HYLS1Q96M11 299 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 AMELYQ99218 206 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 MIEN1Q9BRT3 115 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PSMG3Q9BT73 122 aaPredicted RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 OR8D2Q9GZM6 311 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 WDR61Q9GZS3 305 aaKnown RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 TMEM126AQ9H061 195 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CYSTM1Q9H1C7 97 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 CXCL16Q9H2A7 254 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HEATR1Q9H583 2144 aaKnown RBP0.69□□□□□ -2.3
SMC4-220ENST00000488017 ENY2Q9NPA8 101 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 GPR84Q9NQS5 396 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 FAM206AQ9NX38 181 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 TVP23BQ9NYZ1 205 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 NAT8Q9UHE5 227 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PRNDQ9UKY0 176 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 HIGD1AQ9Y241 93 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 WASHC3Q9Y3C0 194 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 MINOS1-NBL1R4GNA1 71 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 V9GYS6 101 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 SAMD9LQ8IVG5 1584 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 RICTORQ6R327 1708 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 NEXMIFQ5QGS0 1516 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 COL4A1P02462 1669 aa0.69□□□□□ -2.3
SMC4-220ENST00000488017 PXDNQ92626 1479 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 LRP6O75581 1613 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 CEP192Q8TEP8 1941 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 TMED7-TICAM2A0A0A6YYA0 188 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 A0A0D9SG52 128 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MUC21A0A0G2JKD1 596 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 IGHV1-69-2A0A0G2JMI3 117 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 A0A0G2JMM0 328 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 PNMA8CA0A1B0GUJ8 204 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 A0A1W2PPB8 328 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 DUXBA0A1W2PPF3 345 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 OR2T8A6NH00 312 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ARL5CA6NH57 179 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 KIR3DP1A8MWS1 328 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 MCRIP1C9JLW8 97 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 ZNF670-ZNF695F2Z2N8 137 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 H3BQ15 152 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 H3BRN7 92 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 J3KT08 172 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SLC17A3O00476 420 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 UBL3O95164 117 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SOD1P00441 154 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 LGALS1P09382 135 aaKnown RBP0.68□□□□□ -2.3
SMC4-220ENST00000488017 SCTP09683 121 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 UCHL1P09936 223 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SMIM10L2AP0DMW4 78 aa0.68□□□□□ -2.3
SMC4-220ENST00000488017 SMIM10L2BP0DMW5 78 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms