RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ZNF705BP0CI00 300 aaPredicted RBP11.52□□□□□ -0.57
UPF3A-208ENST00000484246 RPL7L1Q6DKI1 246 aaKnown RBP11.52□□□□□ -0.57
UPF3A-208ENST00000484246 LINC00528Q8N1L1 170 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 HSD17B11Q8NBQ5 300 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 RNF141Q8WVD5 230 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 RFNGQ9Y644 331 aa11.52□□□□□ -0.57
UPF3A-208ENST00000484246 SMLR1H3BR10 107 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 BOLA2-SMG1P6H3BVE0 249 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 JTBO76095 146 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 MBP02144 154 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 RAB2AP61019 212 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 HIST1H1AQ02539 215 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-208ENST00000484246 PQLC2Q6ZP29 291 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 KCNRGQ8N5I3 272 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 IGF2BP2-AS1Q96M15 143 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 ODF3Q96PU9 254 aa11.51□□□□□ -0.57
UPF3A-208ENST00000484246 PRAC2D3DTV9 90 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 OR7C2O60412 319 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 UBE2L3P68036 154 aaKnown RBP11.5□□□□□ -0.57
UPF3A-208ENST00000484246 CASC10Q5T4H9 136 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 LYPD1Q8N2G4 141 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 OR11H4Q8NGC9 324 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 OR10G4Q8NGN3 311 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 OR10G9Q8NGN4 311 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 OR10G7Q8NGN6 311 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 AAMDCQ9H7C9 122 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 CYTL1Q9NRR1 136 aa11.5□□□□□ -0.57
UPF3A-208ENST00000484246 IGHV4-28A0A0C4DH34 117 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 A0A1W2PPV4 95 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 SMIM9A6NGZ8 99 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 NPIPB6E9PJ23 425 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 CRXO43186 299 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-208ENST00000484246 TCTE3Q8IZS6 198 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 RPP25LQ8N5L8 163 aaKnown RBP11.49□□□□□ -0.57
UPF3A-208ENST00000484246 OR10J6PQ8NGY7 276 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 ST6GAL2Q96JF0 529 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 SH3BGRL3Q9H299 93 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 GOLT1BQ9Y3E0 138 aa11.49□□□□□ -0.57
UPF3A-208ENST00000484246 AGRNO00468 2067 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 M0R3E3 92 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 OR10J4P0C629 311 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 STAG3L2P0CL84 134 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 STAG3L3P0CL85 134 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 CDC34P49427 236 aaPredicted RBP11.48□□□□□ -0.57
UPF3A-208ENST00000484246 FXYD7P58549 80 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 SPINK13Q1W4C9 94 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 FAM122CQ6P4D5 195 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 C1orf158Q8N1D5 194 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 BLNKQ8WV28 456 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 PHYHIPLQ96FC7 376 aa11.48□□□□□ -0.57
UPF3A-208ENST00000484246 A0A0D9SG52 128 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 INSP01308 110 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 RBMY1A1P0DJD3 496 aaKnown RBP11.47□□□□□ -0.57
UPF3A-208ENST00000484246 RBMY1CP0DJD4 496 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 RBMY1FQ15415 496 aaKnown RBP11.47□□□□□ -0.57
UPF3A-208ENST00000484246 EXOC3-AS1Q8N2X6 119 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 SUN5Q8TC36 379 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 ARPC5LQ9BPX5 153 aa11.47□□□□□ -0.57
UPF3A-208ENST00000484246 M0R2Z0 102 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 TSPOP30536 169 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 CDKN1BP46527 198 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 ICAM4Q14773 271 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 ARL6IP6Q8N6S5 226 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 RAB24Q969Q5 203 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 C20orf144Q9BQM9 153 aa11.46□□□□□ -0.57
UPF3A-208ENST00000484246 TMEM189A5PLL7 270 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 BCL2L11O43521 198 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 C9orf47Q6ZRZ4 202 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 TMEM256Q8N2U0 113 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 ACTR3CQ9C0K3 210 aaPredicted RBP11.45□□□□□ -0.58
UPF3A-208ENST00000484246 Q9H3A6 140 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 OTORQ9NRC9 128 aa11.45□□□□□ -0.58
UPF3A-208ENST00000484246 TRBV7-9A0A0J9YWB2 115 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 RBAKDNA6NC62 111 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 ARL14EPLP0DKL9 152 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 CT45A10P0DMU9 189 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 ZFAND6Q6FIF0 208 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 BAP18Q8IXM2 172 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 FAM19A4Q96LR4 140 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 LINC00477Q96M19 166 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 PPP1R14DQ9NXH3 145 aa11.44□□□□□ -0.58
UPF3A-208ENST00000484246 EIF3GO75821 320 aaKnown RBP eCLIP11.43□□□□□ -0.58
UPF3A-208ENST00000484246 HBE1P02100 147 aa11.43□□□□□ -0.58
UPF3A-208ENST00000484246 SLC25A5P05141 298 aaKnown RBP11.43□□□□□ -0.58
UPF3A-208ENST00000484246 NMBP08949 121 aa11.43□□□□□ -0.58
UPF3A-208ENST00000484246 LEPP41159 167 aa11.43□□□□□ -0.58
UPF3A-208ENST00000484246 RANP62826 216 aaKnown RBP11.43□□□□□ -0.58
UPF3A-208ENST00000484246 C11orf45Q8TAV5 145 aa11.43□□□□□ -0.58
UPF3A-208ENST00000484246 CTXND1A0A1B0GTU2 59 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 KANTRA0A1W2PQU2 76 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 NUPR2A6NF83 97 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 KLLNB2CW77 178 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 DEFB4AO15263 64 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 CXorf1O96002 111 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 C1QBP02746 253 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 SEC11BP0C7V7 166 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 PRB4P10163 310 aaPredicted RBP11.42□□□□□ -0.58
UPF3A-208ENST00000484246 CRISP2P16562 243 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 GCHFRP30047 84 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 CSN1S1P47710 185 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms