RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SMPXQ9UHP9 88 aa5.03□□□□□ -1.6
USP48-208ENST00000479177 YTHDF2Q9Y5A9 579 aaKnown RBP5.03□□□□□ -1.6
USP48-208ENST00000479177 MGAM2Q2M2H8 2515 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 NBEAL1Q6ZS30 2694 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 NOTCH1P46531 2555 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 TRBV19A0A075B6N1 114 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 A0A1W2PS18 150 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 FAM74A7A6NL05 159 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 GGTLC3B5MD39 225 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 C9JQL5 133 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 H3BTX0 84 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 SLC17A3O00476 420 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 CHEK1O14757 476 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 PAGE4O60829 102 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 NDUFB4O95168 129 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 CD5P06127 495 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 NBEAP1P0C6P0 100 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 BMI1P35226 326 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 TAGLN2P37802 199 aaKnown RBP5.02□□□□□ -1.61
USP48-208ENST00000479177 GALR1P47211 349 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 ATP5G3P48201 142 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 UBE2G2P60604 165 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 MEF2BQ02080 365 aaPredicted RBP5.02□□□□□ -1.61
USP48-208ENST00000479177 FOXI1Q12951 378 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 PDE6HQ13956 83 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 UQCC3Q6UW78 93 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 SIGLEC15Q6ZMC9 328 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 ADAMTSL5Q6ZMM2 481 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 OR9G4Q8NGQ1 327 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 RXFP4Q8TDU9 374 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 GRAMD2BQ96HH9 432 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 RARRES2Q99969 163 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 ELOVL1Q9BW60 279 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 RHPN1-AS1Q9BWJ2 59 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 C1orf43Q9BWL3 253 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 TMEM231Q9H6L2 316 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 ZNF586Q9NXT0 402 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 VAX2Q9UIW0 290 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 SMAD5-AS1Q9Y6J3 95 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 SORL1Q92673 2214 aa5.02□□□□□ -1.61
USP48-208ENST00000479177 A0A1W2PRE2 83 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 HELTA6NFD8 242 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 PRSS29PA6NIE9 313 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 C11orf94C9JXX5 98 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 M0QZ24 198 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 OVOL1O14753 267 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 ZNF253O75346 499 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 NDUFS6O75380 124 aaKnown RBP5.01□□□□□ -1.61
USP48-208ENST00000479177 CSN3P07498 182 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 SNRPCP09234 159 aaKnown RBP5.01□□□□□ -1.61
USP48-208ENST00000479177 FOLR2P14207 255 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 CBLN1P23435 193 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 MEOX2P50222 304 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 CD81P60033 236 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 PEA15Q15121 130 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 BLNKQ8WV28 456 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 TMEM158Q8WZ71 300 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 LINC00476Q8WZB0 136 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 EIF5A2Q9GZV4 153 aaKnown RBP5.01□□□□□ -1.61
USP48-208ENST00000479177 PEMTQ9UBM1 199 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 MLXQ9UH92 298 aa5.01□□□□□ -1.61
USP48-208ENST00000479177 SOCS3O14543 225 aa5□□□□□ -1.61
USP48-208ENST00000479177 ATP6V1G1O75348 118 aa5□□□□□ -1.61
USP48-208ENST00000479177 SRP19P09132 144 aaKnown RBP5□□□□□ -1.61
USP48-208ENST00000479177 KRTAP21-3Q3LHN1 58 aa5□□□□□ -1.61
USP48-208ENST00000479177 CST9LP1Q5W188 147 aa5□□□□□ -1.61
USP48-208ENST00000479177 FAM90A2PQ658T7 463 aa5□□□□□ -1.61
USP48-208ENST00000479177 TCF24Q7RTU0 167 aa5□□□□□ -1.61
USP48-208ENST00000479177 CCDC28AQ8IWP9 274 aa5□□□□□ -1.61
USP48-208ENST00000479177 LYPD1Q8N2G4 141 aa5□□□□□ -1.61
USP48-208ENST00000479177 CYB561D1Q8N8Q1 229 aa5□□□□□ -1.61
USP48-208ENST00000479177 C11orf52Q96A22 123 aa5□□□□□ -1.61
USP48-208ENST00000479177 TXNDC17Q9BRA2 123 aa5□□□□□ -1.61
USP48-208ENST00000479177 SLC50A1Q9BRV3 221 aa5□□□□□ -1.61
USP48-208ENST00000479177 Q9H3A6 140 aa5□□□□□ -1.61
USP48-208ENST00000479177 SMDT1Q9H4I9 107 aa5□□□□□ -1.61
USP48-208ENST00000479177 TREM1Q9NP99 234 aa5□□□□□ -1.61
USP48-208ENST00000479177 NRN1Q9NPD7 142 aa5□□□□□ -1.61
USP48-208ENST00000479177 ZNF331Q9NQX6 463 aaPredicted RBP5□□□□□ -1.61
USP48-208ENST00000479177 OTORQ9NRC9 128 aa5□□□□□ -1.61
USP48-208ENST00000479177 SIGLEC8Q9NYZ4 499 aa5□□□□□ -1.61
USP48-208ENST00000479177 TRRAPQ9Y4A5 3859 aa5□□□□□ -1.61
USP48-208ENST00000479177 TRAV8-2A0A0B4J237 113 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 ZNF785A8K8V0 405 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 F6UZH7 168 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 TMEM250H0YL14 139 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 PDE6DO43924 150 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 SFTA3P0C7M3 94 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 ADCYAP1P18509 176 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 RANP62826 216 aaKnown RBP4.99□□□□□ -1.61
USP48-208ENST00000479177 GNG5P63218 68 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 PSG9Q00887 426 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 C12orf54Q6X4T0 127 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 EXOC3-AS1Q8N2X6 119 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 C5orf17Q8NAS9 161 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 DYNLRB2Q8TF09 96 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 TCEAL7Q9BRU2 100 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 NKX6-2Q9C056 277 aaPredicted RBP4.99□□□□□ -1.61
USP48-208ENST00000479177 SLC35B3Q9H1N7 401 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms