RNA–Protein interactions for RNA: ENST00000476642.5

HLA-DPA1-246, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 519 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-246ENST00000476642 BOLA1Q9Y3E2 137 aa9.73□□□□□ -0.85
HLA-DPA1-246ENST00000476642 COL7A1Q02388 2944 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 A0A0J9YX75 114 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 CTXND1A0A1B0GTU2 59 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 CXorf1O96002 111 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 STAG3L2P0CL84 134 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 STAG3L3P0CL85 134 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 SMUG1Q53HV7 270 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 SLC51BQ86UW2 128 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 IQCF2Q8IXL9 164 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 RNF182Q8N6D2 247 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 RPUSD4Q96CM3 377 aaKnown RBP9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 FXYD5Q96DB9 178 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 TMEM167BQ9NRX6 74 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 RFNGQ9Y644 331 aa9.72□□□□□ -0.85
HLA-DPA1-246ENST00000476642 C3orf84H3BNL1 204 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 SLC17A3O00476 420 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 CA1P00915 261 aaPredicted RBP9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 AMBPP02760 352 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OR10J4P0C629 311 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 CSN1S1P47710 185 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RAB14P61106 215 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 DPPA3Q6W0C5 159 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OR4B1Q8NGF8 309 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OR8A1Q8NGG7 326 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OR10J6PQ8NGY7 276 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 C20orf173Q96LM9 149 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RCHY1Q96PM5 261 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 PPP1R14DQ9NXH3 145 aa9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 KMT2CQ8NEZ4 4911 aaKnown RBP9.71□□□□□ -0.86
HLA-DPA1-246ENST00000476642 H3BTX0 84 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 NDUFB4O95168 129 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 SNRPCP09234 159 aaKnown RBP9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ARL14EPLP0DKL9 152 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RAB5CP51148 216 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 IGFL4Q6B9Z1 124 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 C9orf62Q8N4C0 152 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RXFP4Q8TDU9 374 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ZNF503Q96F45 646 aa9.7□□□□□ -0.86
HLA-DPA1-246ENST00000476642 AGRNO00468 2067 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 SPRY2O43597 315 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 CNN1P51911 297 aaKnown RBP9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RANP62826 216 aaKnown RBP9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 HIST1H1AQ02539 215 aaPredicted RBP9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ICAM4Q14773 271 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 CLLU1Q5K131 121 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 GDF5OSQ5U4N7 250 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ARL6IP6Q8N6S5 226 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RNF183Q96D59 192 aa9.69□□□□□ -0.86
HLA-DPA1-246ENST00000476642 A8MTW9 85 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 F6UB75 175 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TEX46H3BTG2 121 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 HMGB3O15347 200 aaKnown RBP9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 IGKV3-20P01619 116 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 HLA-DMBP28068 263 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 GCHFRP30047 84 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 DEFB135Q30KP9 77 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TOR2AQ5JU69 321 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TEX261Q6UWH6 196 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 CMTM2Q8TAZ6 248 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 Q9H3A6 140 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OTORQ9NRC9 128 aa9.68□□□□□ -0.86
HLA-DPA1-246ENST00000476642 MAP1LC3B2A6NCE7 125 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TSPOP30536 169 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 EXOC3-AS1Q8N2X6 119 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TMED6Q8WW62 240 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 PHYHIPLQ96FC7 376 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 NKX6-2Q9C056 277 aaPredicted RBP9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 MAP1LC3BQ9GZQ8 125 aa9.67□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ZNF705FA8MVS1 300 aaPredicted RBP9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 DEFB1P60022 68 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ZNF680Q8NEM1 530 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 FAM213BQ8TBF2 198 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 LINC00477Q96M19 166 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ODF3Q96PU9 254 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 OVOL2Q9BRP0 275 aa9.66□□□□□ -0.86
HLA-DPA1-246ENST00000476642 DNAH9Q9NYC9 4486 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 STAB2Q8WWQ8 2551 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 SERTM2A0A1B0GWG4 89 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 A0A1W2PRE2 83 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RBAKDNA6NC62 111 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 PGPA6NDG6 321 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 NPIPB6E9PJ23 425 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 K7EQM0 130 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 M0R3E3 92 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 SLC25A5P05141 298 aaKnown RBP9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 H2AFB1P0C5Y9 115 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 PPT1P50897 306 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 ZNF726P1Q15940 193 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 TMEM78Q5T7P6 136 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 MUC7Q8TAX7 377 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 MBD3L1Q8WWY6 194 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 RARRES2Q99969 163 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 MED9Q9NWA0 146 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 XCL2Q9UBD3 114 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 GOLT1BQ9Y3E0 138 aa9.65□□□□□ -0.86
HLA-DPA1-246ENST00000476642 EIF3GO75821 320 aaKnown RBP eCLIP9.64□□□□□ -0.87
HLA-DPA1-246ENST00000476642 HBE1P02100 147 aa9.64□□□□□ -0.87
HLA-DPA1-246ENST00000476642 ZNF705DP0CH99 300 aaPredicted RBP9.64□□□□□ -0.87
HLA-DPA1-246ENST00000476642 ZNF705BP0CI00 300 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms