RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PKHD1L1Q86WI1 4243 aa12.32□□□□□ -0.44
SHH-205ENST00000472308 SYNGR2O43760 224 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 PRAF2O60831 178 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 EVI2AP22794 236 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 LEPP41159 167 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 RPP30P78346 268 aaKnown RBP12.31□□□□□ -0.44
SHH-205ENST00000472308 MRPS10P82664 201 aaKnown RBP12.31□□□□□ -0.44
SHH-205ENST00000472308 MRPL23Q16540 153 aaKnown RBP12.31□□□□□ -0.44
SHH-205ENST00000472308 Q6ZSA8 131 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 NEGR1Q7Z3B1 354 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 Q8N814 137 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 C8orf49Q96NF6 230 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 ARL6Q9H0F7 186 aa12.31□□□□□ -0.44
SHH-205ENST00000472308 DUXBA0A1W2PPF3 345 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 SMCO3A2RU48 225 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 MED6O75586 246 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 C1QBP02746 253 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 SLC25A6P12236 298 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 ANXA3P12429 323 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 ANXA7P20073 488 aaKnown RBP12.3□□□□□ -0.44
SHH-205ENST00000472308 FHL2Q14192 279 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 ARV1Q9H2C2 271 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 HHLA3Q9XRX5 114 aa12.3□□□□□ -0.44
SHH-205ENST00000472308 ATP6V1G2O95670 118 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 CRYGDP07320 174 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 TCL1AP56279 114 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 KRTAP10-4P60372 401 aaPredicted RBP12.29□□□□□ -0.44
SHH-205ENST00000472308 SELENOTP62341 195 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 ANXA2RQ3ZCQ2 193 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 VCX3AQ9NNX9 186 aa12.29□□□□□ -0.44
SHH-205ENST00000472308 MORN5Q5VZ52 161 aa12.28□□□□□ -0.44
SHH-205ENST00000472308 SCGB3A2Q96PL1 93 aa12.28□□□□□ -0.44
SHH-205ENST00000472308 VGLL1Q99990 258 aa12.28□□□□□ -0.44
SHH-205ENST00000472308 MRPL16Q9NX20 251 aaKnown RBP12.28□□□□□ -0.44
SHH-205ENST00000472308 STRAPQ9Y3F4 350 aaKnown RBP12.28□□□□□ -0.44
SHH-205ENST00000472308 A0A087WXM4 84 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 ANKRD20A5PA0PJZ0 165 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 C7orf71A4D174 169 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 H3BQ15 152 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 K7EPK0 472 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 K7EQD1 137 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 PSCAO43653 123 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 SLC25A5P05141 298 aaKnown RBP12.27□□□□□ -0.45
SHH-205ENST00000472308 IGLC2P0DOY2 106 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 LINC00305Q7Z4B0 112 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 EIF4E3Q8N5X7 224 aaKnown RBP12.27□□□□□ -0.45
SHH-205ENST00000472308 LRTM2Q8N967 370 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 SAT2Q96F10 170 aaPredicted RBP12.27□□□□□ -0.45
SHH-205ENST00000472308 NAA50Q9GZZ1 169 aaKnown RBP12.27□□□□□ -0.45
SHH-205ENST00000472308 SCP2D1Q9UJQ7 156 aa12.27□□□□□ -0.45
SHH-205ENST00000472308 KLLNB2CW77 178 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 CCNKO75909 580 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 CD300CQ08708 224 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 SLAQ13239 276 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 BTN1A1Q13410 526 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 S100A7AQ86SG5 101 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 C10orf126Q8N4M7 172 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 TP53TG3Q9ULZ0 132 aa12.26□□□□□ -0.45
SHH-205ENST00000472308 E5RGE8 158 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 CTDSPLO15194 276 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 OXTP01178 125 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 SRIP30626 198 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 SLC38A11Q08AI6 406 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 CTF1Q16619 201 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 C4orf46Q504U0 113 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 IBA57Q5T440 356 aaKnown RBP12.25□□□□□ -0.45
SHH-205ENST00000472308 BPIFA4PQ86YQ2 179 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 FAM19A4Q96LR4 140 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 MRPL32Q9BYC8 188 aaKnown RBP12.25□□□□□ -0.45
SHH-205ENST00000472308 MCUBQ9NWR8 336 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 RABL2BQ9UNT1 228 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 PXMP4Q9Y6I8 212 aa12.25□□□□□ -0.45
SHH-205ENST00000472308 PIGBOS1A0A0B4J2F0 54 aa12.24□□□□□ -0.45
SHH-205ENST00000472308 CTDSP2O14595 271 aa12.24□□□□□ -0.45
SHH-205ENST00000472308 RRAS2P62070 204 aaPredicted RBP12.24□□□□□ -0.45
SHH-205ENST00000472308 RNF24Q9Y225 148 aa12.24□□□□□ -0.45
SHH-205ENST00000472308 RCL1Q9Y2P8 373 aaKnown RBP12.24□□□□□ -0.45
SHH-205ENST00000472308 ERCC8Q13216 396 aa12.23□□□□□ -0.45
SHH-205ENST00000472308 OPCMLQ14982 345 aa12.23□□□□□ -0.45
SHH-205ENST00000472308 Q6ZQT7 251 aa12.23□□□□□ -0.45
SHH-205ENST00000472308 TMEM37Q8WXS4 190 aa12.23□□□□□ -0.45
SHH-205ENST00000472308 LRP2P98164 4655 aa12.22□□□□□ -0.45
SHH-205ENST00000472308 RGS5O15539 181 aa12.22□□□□□ -0.45
SHH-205ENST00000472308 POLR2GP62487 172 aaKnown RBP eCLIP12.22□□□□□ -0.45
SHH-205ENST00000472308 WFDC2Q14508 124 aa12.22□□□□□ -0.45
SHH-205ENST00000472308 TMEM128Q5BJH2 165 aa12.22□□□□□ -0.45
SHH-205ENST00000472308 PXDC1Q5TGL8 231 aa12.22□□□□□ -0.45
SHH-205ENST00000472308 HOXB5P09067 269 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 SFTA3P0C7M3 94 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 GYPEP15421 78 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 VAMP1P23763 118 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 RNASE4P34096 147 aaKnown RBP12.21□□□□□ -0.45
SHH-205ENST00000472308 ZNF415Q09FC8 603 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 IL18Q14116 193 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 PRR9Q5T870 116 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 NPVFQ9HCQ7 196 aa12.21□□□□□ -0.45
SHH-205ENST00000472308 TRGV4A0A0C4DH28 118 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 IBA57-AS1B1ANH7 110 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 M0R3E3 92 aa12.2□□□□□ -0.46
SHH-205ENST00000472308 MPDU1O75352 247 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms