RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ORM2P19652 201 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 EVI2AP22794 236 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 GALR1P47211 349 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 MEOX2P50222 304 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 AQP4P55087 323 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 TAS2R46P59540 309 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 DAZ2Q13117 558 aaKnown RBP3.44□□□□□ -1.86
PTPN4-209ENST00000469511 PSG3Q16557 428 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 LELP1Q5T871 98 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 ETFRF1Q6IPR1 90 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 LPCAT3Q6P1A2 487 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 NEGR1Q7Z3B1 354 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 NOXA1Q86UR1 476 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 LHFPL1Q86WI0 220 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 OR4D10Q8NGI6 311 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 OR52E5Q8NH55 327 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 GPX8Q8TED1 209 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 GLYATL2Q8WU03 294 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 RRNAD1Q96FB5 475 aaKnown RBP3.44□□□□□ -1.86
PTPN4-209ENST00000469511 CHAC1Q9BUX1 264 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 DNAJC4Q9NNZ3 241 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.44□□□□□ -1.86
PTPN4-209ENST00000469511 MRPL16Q9NX20 251 aaKnown RBP3.44□□□□□ -1.86
PTPN4-209ENST00000469511 TP53TG3Q9ULZ0 132 aa3.44□□□□□ -1.86
PTPN4-209ENST00000469511 RCL1Q9Y2P8 373 aaKnown RBP3.44□□□□□ -1.86
PTPN4-209ENST00000469511 IBA57-AS1B1ANH7 110 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 H3BRN7 92 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 K7EQD1 137 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 SPINK4O60575 86 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 ADAP1O75689 374 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 CDS2O95674 445 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 IGLV2-11P01706 119 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 CT45A10P0DMU9 189 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 PRSS3P35030 304 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 NUP62P37198 522 aaPredicted RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 RPL37AP61513 92 aaKnown RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 ZNF415Q09FC8 603 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 MRPL23Q16540 153 aaKnown RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 CCDC190Q86UF4 302 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 SNX29P2Q8IUI4 249 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 NRACQ8N912 160 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 THAP8Q8NA92 274 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 RNASE11Q8TAA1 199 aaKnown RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 ZNF431Q8TF32 576 aaPredicted RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 BAALCQ8WXS3 180 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 RPUSD4Q96CM3 377 aaKnown RBP3.43□□□□□ -1.86
PTPN4-209ENST00000469511 URB1-AS1Q96HZ7 61 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 DNAJC30Q96LL9 226 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 TRGV9Q99603 122 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 RBKSQ9H477 322 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 HHLA3Q9XRX5 114 aa3.43□□□□□ -1.86
PTPN4-209ENST00000469511 SLC17A3O00476 420 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 MRPS12O15235 138 aaKnown RBP3.42□□□□□ -1.86
PTPN4-209ENST00000469511 IGHV3-30P01768 117 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 IGHV3-33P01772 117 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 IGHV3-30-3P0DP02 117 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 IGHV3-30-5P0DP03 117 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 S100GP29377 79 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 RCVRNP35243 200 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 CD300CQ08708 224 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 PATE2Q6UY27 113 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 C10orf67Q8IYJ2 551 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 LGI3Q8N145 548 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 SAMD12Q8N8I0 201 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 OR4D5Q8NGN0 318 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 OR1B1Q8NGR6 318 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 OR13C8Q8NGS7 320 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 MARCH1Q8TCQ1 289 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 BLNKQ8WV28 456 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 S100A16Q96FQ6 103 aaKnown RBP3.42□□□□□ -1.86
PTPN4-209ENST00000469511 ZNF479Q96JC4 524 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 ST6GAL2Q96JF0 529 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 SLC35E1Q96K37 410 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 RTBDNQ9BSG5 229 aaPredicted RBP3.42□□□□□ -1.86
PTPN4-209ENST00000469511 TMEM222Q9H0R3 208 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 C8orf4Q9NR00 106 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 PRO0255Q9UI72 69 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 SSR3Q9UNL2 185 aa3.42□□□□□ -1.86
PTPN4-209ENST00000469511 TEX13DA0A0J9YY54 714 aaPredicted RBP3.41□□□□□ -1.86
PTPN4-209ENST00000469511 LOC100506127A0A0U1RQW1 187 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 PMS2P5A8MQ11 134 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 PRSS46E5RG02 174 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 PANO1I0J062 215 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 RS1O15537 224 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 CD3DP04234 171 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 IAPPP10997 89 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 GPX4P36969 197 aaPredicted RBP3.41□□□□□ -1.86
PTPN4-209ENST00000469511 ERCC8Q13216 396 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 UBE2NLQ5JXB2 153 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 PRR9Q5T870 116 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 FAAP20Q6NZ36 180 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 FAM219AQ8IW50 185 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 LRTM2Q8N967 370 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 DTD1Q8TEA8 209 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 RBPMSQ93062 196 aaKnown RBP3.41□□□□□ -1.86
PTPN4-209ENST00000469511 C20orf144Q9BQM9 153 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 SHANK2-AS3Q9BTD1 123 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 MRPL32Q9BYC8 188 aaKnown RBP3.41□□□□□ -1.86
PTPN4-209ENST00000469511 COPZ2Q9P299 210 aa3.41□□□□□ -1.86
PTPN4-209ENST00000469511 U3KQ87 197 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms